genome.fa.s3548.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003548.1 Hibiscus syriacus cultivar Beakdansim tig00007480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58969

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4615--4643	11	2.7	11	94	5	51	37	0	0	62	0.96
6023--6060	2	19.0	2	100	0	76	50	0	0	50	1.00
8031--8063	16	2.0	17	88	5	50	30	9	18	42	1.81
8150--8190	2	20.5	2	100	0	82	48	0	0	51	1.00
18288--18312	2	12.5	2	100	0	50	52	0	48	0	1.00
19375--19411	20	1.9	19	89	10	58	45	10	24	18	1.81
20200--20230	15	2.1	15	93	0	53	38	0	0	61	0.96
20743--20807	2	33.0	2	96	3	123	50	0	0	49	1.00
23294--23332	21	1.9	20	84	5	51	43	0	2	53	1.14
23292--23364	31	2.3	31	80	2	83	41	2	6	49	1.44
33290--33320	14	2.2	14	100	0	62	32	0	0	67	0.91
39667--39711	23	2.0	23	95	0	81	11	8	48	31	1.69
39669--39711	11	3.8	11	90	6	68	11	6	48	32	1.66
39826--39858	13	2.5	13	100	0	66	12	15	60	12	1.59
41725--41784	31	1.9	31	93	0	102	40	6	10	43	1.64
42306--42375	23	2.7	26	81	18	85	54	1	0	44	1.09
42306--42454	63	2.4	64	87	5	225	56	2	0	40	1.13
42770--42819	20	2.5	20	96	0	91	40	24	14	22	1.90
42810--42907	21	4.8	20	73	6	79	36	21	19	22	1.95
42875--43068	20	9.6	20	76	8	76	35	25	19	19	1.95
42871--43068	40	5.0	39	81	4	200	35	26	19	19	1.95
42875--43067	60	3.2	60	83	0	251	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43448--43518	33	2.2	33	92	0	115	11	22	18	47	1.80
43638--43692	14	3.6	14	73	21	56	41	23	25	9	1.83
43638--43708	33	2.2	33	94	0	124	43	25	22	8	1.81
43704--43801	19	5.7	19	70	22	81	10	24	22	42	1.84
43726--43815	14	5.7	14	74	23	81	8	25	23	42	1.83
43709--43823	33	3.5	33	95	0	212	9	24	20	45	1.81
45516--46076	92	6.1	93	97	2	1071	22	12	18	46	1.83
45516--46076	185	3.0	186	97	1	1071	22	12	18	46	1.83
46120--46248	19	7.3	19	75	17	125	45	28	17	8	1.77
46156--46248	33	2.8	32	91	4	150	46	27	18	7	1.76
46120--46248	52	2.5	52	74	14	140	45	28	17	8	1.77
46244--46378	19	7.6	19	74	16	119	11	18	23	45	1.82
46266--46322	14	3.7	14	77	20	60	10	21	22	45	1.82
46249--46341	33	2.8	33	93	0	159	11	19	21	47	1.81
46838--46898	21	3.0	20	73	7	68	26	37	16	19	1.93
48299--48334	14	2.6	14	95	0	63	33	0	22	44	1.53
48441--48542	19	5.6	19	84	13	151	44	17	23	14	1.86
48571--48901	19	18.7	19	81	15	433	14	21	17	46	1.83
48571--48927	142	2.6	140	91	4	539	14	21	18	46	1.84
48571--48901	52	6.2	52	88	8	399	14	21	17	46	1.83
51204--51228	12	2.1	12	100	0	50	0	28	0	72	0.86
51403--51449	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52129--52497	20	18.5	20	86	4	458	20	18	26	34	1.96
55186--55215	15	2.0	15	93	0	51	53	0	3	43	1.17
57806--57849	18	2.5	17	77	3	52	59	2	6	31	1.36

Tables:   1

The End!