genome.fa.s3549.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003549.1 Hibiscus syriacus cultivar Beakdansim tig00007488_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82635

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4328--4389	20	3.0	20	77	11	72	22	38	25	12	1.90
8854--8907	20	2.8	20	80	2	65	48	22	16	12	1.80
9134--9182	22	2.3	21	80	10	55	22	12	42	22	1.86
9141--9184	22	2.0	22	90	0	70	18	13	45	22	1.84
9372--9465	20	4.7	20	77	2	80	23	17	24	35	1.95
9419--9510	20	4.5	21	71	14	59	18	19	18	43	1.88
9392--9469	41	1.9	41	83	0	102	21	15	21	41	1.90
9352--9466	20	5.7	20	76	5	79	23	16	23	36	1.94
9455--9547	41	2.3	41	100	0	150	17	24	18	39	1.91
9455--9547	20	4.6	20	78	4	96	17	24	18	39	1.91
9556--9607	21	2.5	21	93	0	95	36	26	19	17	1.94
12926--12977	26	2.0	26	100	0	104	34	19	11	34	1.88
21951--21980	2	15.0	2	92	0	51	46	0	0	53	1.00
22294--22328	2	17.5	2	100	0	70	51	0	0	48	1.00
28477--29975	182	8.2	182	92	1	2380	43	12	15	28	1.84
31751--31806	24	2.5	22	77	13	60	39	0	8	51	1.33
32455--32493	18	2.2	18	100	0	78	56	0	38	5	1.22
32795--32830	17	2.1	17	100	0	72	50	8	11	30	1.67
34155--35063	198	4.6	197	91	3	1383	36	16	14	32	1.90
35455--35504	15	3.3	15	94	0	82	20	48	0	32	1.50
36632--36681	12	4.2	12	86	0	64	44	2	32	22	1.64
36632--36677	6	7.7	6	87	0	56	45	2	32	19	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38002--38054	24	2.2	24	89	0	79	37	1	13	47	1.54
38415--39288	200	4.4	199	83	5	1028	39	16	13	31	1.87
39001--39046	21	2.1	21	84	4	56	30	15	10	43	1.81
41829--42344	198	2.6	198	80	8	493	37	13	16	31	1.88
42422--42480	23	2.6	23	86	0	82	33	16	6	42	1.75
42346--42508	87	1.9	87	94	0	290	31	15	12	41	1.84
43161--43190	2	15.0	2	100	0	60	50	0	0	50	1.00
47980--48046	16	4.2	16	92	0	107	35	1	19	43	1.60
48032--48075	24	1.9	22	81	9	52	40	0	15	43	1.47
48328--48367	18	2.2	19	90	4	64	60	12	0	27	1.33
49117--49165	24	2.0	24	100	0	98	28	20	20	30	1.98
55434--55480	18	2.6	18	96	0	85	17	27	23	31	1.96
61249--61280	11	3.1	11	91	8	50	59	0	0	40	0.97
62082--62114	2	16.5	2	100	0	66	51	0	0	48	1.00
62894--62921	2	14.0	2	100	0	56	50	0	0	50	1.00
64639--64709	25	2.9	25	73	19	69	61	2	5	29	1.33
66738--66774	3	12.0	3	94	5	65	64	0	0	35	0.94
66928--67066	45	3.1	45	83	5	183	33	19	20	27	1.96
67001--67366	75	4.9	76	87	3	521	33	19	18	28	1.96
67008--67366	151	2.4	151	90	2	555	33	19	18	28	1.95
67300--67388	44	2.0	45	84	4	117	30	20	22	26	1.98
69604--70021	118	3.5	118	94	0	719	28	23	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70753--70822	34	2.1	32	84	5	86	24	28	15	31	1.96
71760--71801	21	2.0	21	95	0	75	14	28	40	16	1.88
74515--74556	21	2.0	21	95	0	75	14	28	40	16	1.88
78144--78225	14	5.7	14	73	13	51	56	10	13	19	1.67
78198--78238	20	2.0	20	90	0	64	63	9	9	17	1.51
81140--81167	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!