Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003551.1 Hibiscus syriacus cultivar Beakdansim tig00007496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102512

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1127--1172
17
2.9
16
81
9
58
47
0
0
52
1.00
1792--1821
15
2.0
15
93
0
51
36
0
0
63
0.95
1790--1851
26
2.5
24
82
12
81
37
0
0
62
0.95
1799--1851
26
2.1
25
92
3
88
35
0
0
64
0.94
7250--7294
22
2.0
22
86
0
63
33
4
2
60
1.29
8424--8470
2
24.0
2
93
4
78
0
53
0
46
1.00
8470--8536
2
33.5
2
100
0
134
49
0
0
50
1.00
9026--9054
13
2.2
13
100
0
58
51
13
17
17
1.76
11553--11578
3
8.7
3
100
0
52
30
34
0
34
1.58
15255--15364
38
3.0
38
64
23
90
51
10
5
31
1.59
15258--15434
73
2.4
73
87
0
248
48
11
5
34
1.63
15258--15372
37
3.2
35
67
26
87
52
10
5
32
1.58
24395--24461
32
2.0
34
83
11
86
34
0
5
59
1.22
24664--24808
69
2.1
69
96
0
263
33
11
15
38
1.84
33079--33149
35
2.0
35
94
0
124
32
15
12
39
1.85
39223--39302
35
2.3
35
89
4
117
45
22
0
32
1.53
39223--39318
35
2.7
35
85
0
102
42
27
1
29
1.62
39482--39759
148
1.9
144
91
3
450
37
6
10
46
1.62
43434--43463
15
1.9
16
93
6
53
26
30
6
36
1.82
46379--46448
33
2.1
33
97
0
131
44
8
7
40
1.62
47236--47467
4
58.0
4
100
0
464
25
0
25
50
1.50
49070--49114
2
22.5
2
100
0
90
48
0
51
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51971--52046
35
2.2
35
90
4
118
39
23
2
34
1.69
52443--52689
129
1.9
130
89
0
388
37
14
12
35
1.84
52616--52663
23
2.2
21
85
7
60
33
14
18
33
1.91
53153--53185
16
1.9
18
88
11
52
63
6
3
27
1.32
53694--53746
2
26.5
2
100
0
106
49
0
0
50
1.00
56559--56588
15
2.0
15
93
0
51
6
16
66
10
1.41
57896--57944
18
2.8
18
96
3
91
20
18
40
20
1.91
60638--60685
21
2.3
21
92
0
78
66
8
12
12
1.44
65815--65856
21
2.0
21
95
4
77
33
4
0
61
1.17
65812--65858
20
2.4
19
89
10
76
38
4
0
57
1.18
77535--77707
90
1.9
91
85
5
244
28
24
17
28
1.98
77584--77708
45
2.8
44
71
10
119
27
23
18
31
1.97
83538--83585
22
2.2
22
85
3
62
27
22
25
25
2.00
83538--83618
23
3.7
23
74
14
89
25
24
24
24
2.00
83538--83636
44
2.3
42
78
13
103
26
24
25
24
2.00
86217--86268
19
2.7
19
96
0
95
32
30
17
19
1.95
86152--86313
83
1.9
84
85
3
220
30
24
17
28
1.97
101014--101040
14
1.9
14
100
0
54
22
40
7
29
1.81

Tables:   1

The End!