Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003554.1 Hibiscus syriacus cultivar Beakdansim tig00007499_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75821

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1576--1648
36
2.0
37
86
7
105
47
4
1
46
1.30
2648--2675
2
14.0
2
100
0
56
50
0
0
50
1.00
3408--3439
16
1.9
17
93
6
57
50
0
9
40
1.35
8708--8732
2
12.5
2
100
0
50
52
0
0
48
1.00
23088--23113
3
8.7
3
100
0
52
69
30
0
0
0.89
40110--40166
16
3.5
15
78
19
60
31
7
0
61
1.23
43343--43375
3
11.0
3
100
0
66
66
0
33
0
0.92
43738--43769
6
5.2
6
92
7
55
15
37
31
15
1.89
44707--44774
37
1.9
35
82
8
84
60
0
1
38
1.06
44719--44792
31
2.4
31
80
14
82
58
0
4
37
1.17
45681--45790
41
2.7
40
87
4
166
18
19
25
37
1.94
45706--45778
20
3.6
20
72
3
74
10
20
27
41
1.86
45685--45790
20
5.2
21
66
7
58
17
18
26
36
1.94
45819--45884
21
3.2
21
65
4
62
15
16
28
39
1.89
45806--45892
41
2.1
41
82
4
104
20
19
25
34
1.96
45827--45900
21
3.6
21
68
3
69
20
17
27
35
1.95
46039--46070
14
2.4
14
90
10
50
53
6
0
40
1.26
49597--49649
25
2.0
26
85
7
72
43
22
3
30
1.71
60697--60729
16
2.1
16
100
0
66
36
6
27
30
1.81
73510--73622
29
3.9
29
90
2
174
17
36
27
18
1.94
73715--73861
45
4.0
36
73
19
133
18
36
22
23
1.95
73701--73851
81
1.9
77
90
8
241
19
37
19
23
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73797--73862
32
2.0
34
85
8
93
18
34
24
22
1.96
73890--73969
29
2.8
29
94
0
133
10
26
33
30
1.89

Tables:   1

The End!