Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003555.1 Hibiscus syriacus cultivar Beakdansim tig00007501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51605

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1070--1133
21
3.1
20
81
4
74
40
10
28
20
1.86
1070--1133
20
3.1
20
86
4
83
40
10
28
20
1.86
2986--3034
19
2.6
19
96
0
89
32
2
10
55
1.45
3264--4048
197
4.0
199
92
3
1293
35
14
18
31
1.91
3264--4048
397
2.0
391
92
2
1295
35
14
18
31
1.91
5507--5543
12
3.1
12
88
0
56
43
8
32
16
1.77
5524--5574
3
17.0
3
83
0
57
41
1
31
25
1.67
6866--7105
118
2.0
119
92
2
403
32
13
15
38
1.87
7163--7401
117
2.0
120
92
4
405
32
13
15
39
1.86
6796--7566
296
2.6
298
94
3
1363
33
14
16
35
1.89
10289--10353
23
2.8
23
90
0
103
35
6
20
38
1.77
10281--10358
23
3.5
22
85
3
95
35
5
20
38
1.75
23633--23721
34
2.7
32
77
10
90
39
0
2
58
1.11
25443--25490
21
2.3
21
85
0
60
25
39
12
22
1.89
25494--25587
21
4.5
21
92
5
129
18
35
26
20
1.95
26110--26206
33
2.9
34
85
3
133
55
4
3
37
1.35
26108--26213
34
3.2
33
82
8
133
54
4
2
37
1.36
26502--27105
126
4.8
126
98
0
1145
32
19
25
21
1.97
30199--30234
13
2.9
12
87
4
54
44
0
0
55
0.99
30197--30238
12
3.4
13
83
9
61
45
0
0
54
0.99
30247--30303
23
2.6
23
94
5
100
43
12
3
40
1.59
30697--30733
19
1.9
20
88
5
58
29
0
2
67
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30697--30745
19
2.5
20
80
12
57
34
0
2
63
1.06
30776--30831
22
2.5
23
85
5
80
35
1
3
58
1.26
32421--32447
2
13.5
2
100
0
54
48
0
0
51
1.00
32611--32692
44
1.9
41
85
11
112
31
6
28
34
1.82
32613--32703
19
4.4
20
78
16
105
35
5
27
31
1.80
33077--33113
19
1.9
19
88
0
56
21
13
29
35
1.92
34397--34427
15
2.1
15
100
0
62
41
19
32
6
1.77
40204--40254
26
2.0
26
96
0
93
37
1
0
60
1.08
41890--41947
31
1.9
29
83
13
73
41
22
6
29
1.80
46114--46146
2
17.5
2
87
12
52
51
0
0
48
1.00
46827--46860
2
17.0
2
100
0
68
0
50
0
50
1.00
46860--46924
2
32.5
2
100
0
130
49
0
0
50
1.00
47409--47437
13
2.2
13
100
0
58
51
13
17
17
1.76

Tables:   1

The End!