Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003557.1 Hibiscus syriacus cultivar Beakdansim tig00007507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 193288
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:4521 original size:16 final size:16
Alignment explanation
Indices: 4484--4514 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4474 CATCAAATTC
4484 AAACATAACAATCCAA
1 AAACATAACAATCCAA
*
4500 AAACATATCAATCCA
1 AAACATAACAATCCA
4515 TCAACATCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.26, G:0.00, T:0.16
Consensus pattern (16 bp):
AAACATAACAATCCAA
Found at i:4800 original size:13 final size:15
Alignment explanation
Indices: 4776--4809 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
4766 GCTAAGTCCT
4776 ACTAAGTATTAA-GA
1 ACTAAGTATTAATGA
4790 ACTAA-TATTAATGA
1 ACTAAGTATTAATGA
4804 ACTAAG
1 ACTAAG
4810 AAAAATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (15 bp):
ACTAAGTATTAATGA
Found at i:18448 original size:23 final size:23
Alignment explanation
Indices: 18375--18454 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 23
18365 CACAGCAGAG
*
18375 TGCATCGATGCACATTCAAGGAA
1 TGCATCGATGCACATTCAAGGGA
** *
18398 TGCATCGGCGCATC-TTC-A-TGA
1 TGCATCGATGCA-CATTCAAGGGA
*
18419 TGTATCGATGCACATTCAAGGGA
1 TGCATCGATGCACATTCAAGGGA
18442 TGCATCGATGCAC
1 TGCATCGATGCAC
18455 TGTCTAGTGT
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
20 1 0.02
21 13 0.30
22 2 0.05
23 27 0.61
24 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (23 bp):
TGCATCGATGCACATTCAAGGGA
Found at i:24414 original size:65 final size:65
Alignment explanation
Indices: 24265--24414 Score: 194
Period size: 65 Copynumber: 2.3 Consensus size: 65
24255 TACACTAGGG
* * ** *
24265 GTGCATCGGTACACTAATTATATTCGATGTTTCAAAAGAGCCAAGAGTGTATCGATGCATGGTCT
1 GTGCATCGGTACACAAAATGCATTCGATGTTTCAAAAGAGCCAAGAGTGGATCGATGCATGGTCT
* * ** *
24330 GTGCATTGGTACACAAAATGCATTCGATGTTTCAAAATATTCACGAGTGGATCGATGCATGG-CT
1 GTGCATCGGTACACAAAATGCATTCGATGTTTCAAAAGAGCCAAGAGTGGATCGATGCATGGTC-
24394 T
65 T
24395 GTGCATCGGTACACAAAATG
1 GTGCATCGGTACACAAAATG
24415 TATTTGAAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
64 1 0.01
65 72 0.99
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (65 bp):
GTGCATCGGTACACAAAATGCATTCGATGTTTCAAAAGAGCCAAGAGTGGATCGATGCATGGTCT
Found at i:25402 original size:30 final size:30
Alignment explanation
Indices: 25368--25544 Score: 124
Period size: 30 Copynumber: 5.5 Consensus size: 30
25358 GCTTGAGACA
25368 GTTTCTCTTGAAACATAAACCTTTGAGATT
1 GTTTCTCTTGAAACATAAACCTTTGAGATT
* * * *
25398 GTTTCTCTTGAAACA-AATTTTGTCTCGCTTGAAATA
1 GTTTCTCTTGAAACATAA-----AC-C-TTTGAGATT
25434 GTTTCTCTTGAAACATAAACCTTTGAGATT
1 GTTTCTCTTGAAACATAAACCTTTGAGATT
* **
25464 GTTTCTCTTGAAACA-AATTTCGTCTTGCTTGAGACA
1 GTTTCTCTTGAAACATAA--AC--C-T--TTGAGATT
* *
25500 ATTTCTCTTGAAATATAAACCTTTGAGATT
1 GTTTCTCTTGAAACATAAACCTTTGAGATT
*
25530 GTTTCTCTTAAAACA
1 GTTTCTCTTGAAACA
25545 AAGTTTCGTC
Statistics
Matches: 112, Mismatches: 19, Indels: 32
0.69 0.12 0.20
Matches are distributed among these distances:
29 4 0.04
30 54 0.48
31 2 0.02
32 2 0.02
33 2 0.02
34 2 0.02
35 2 0.02
36 40 0.36
37 4 0.04
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (30 bp):
GTTTCTCTTGAAACATAAACCTTTGAGATT
Found at i:25437 original size:66 final size:66
Alignment explanation
Indices: 25333--25578 Score: 384
Period size: 66 Copynumber: 3.7 Consensus size: 66
25323 CTTGAGACAT
* *
25333 TTTCTCTTAAAACAAATTTTGTCTAGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGATT
1 TTTCTCTTAAAACAAATTTCGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGATT
25398 G
66 G
* * * *
25399 TTTCTCTTGAAACAAATTTTGTCTCGCTTGAAATAGTTTCTCTTGAAACATAAACCTTTGAGATT
1 TTTCTCTTAAAACAAATTTCGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGATT
25464 G
66 G
* * * *
25465 TTTCTCTTGAAACAAATTTCGTCTTGCTTGAGACAATTTCTCTTGAAATATAAACCTTTGAGATT
1 TTTCTCTTAAAACAAATTTCGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGATT
25530 G
66 G
*
25531 TTTCTCTTAAAACAAAGTTTCGTCTCGCTTGAGACAGTTTCCCTTGAA
1 TTTCTCTTAAAACAAA-TTTCGTCTCGCTTGAGACAGTTTCTCTTGAA
25579 GCCCAAATTT
Statistics
Matches: 165, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
66 137 0.83
67 28 0.17
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (66 bp):
TTTCTCTTAAAACAAATTTCGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGATT
G
Found at i:25445 original size:36 final size:36
Alignment explanation
Indices: 25314--25512 Score: 129
Period size: 36 Copynumber: 5.9 Consensus size: 36
25304 GAATAGATTG
* * *
25314 TTTGTCTCCCTTGAGACATTTTCTCTTAAAACAAAT
1 TTTGTCTCGCTTGAGACAGTTTCTCTTGAAACAAAT
*
25350 TTTGTCTAGCTTGAGACAGTTTCTCTTGAAACATAA-
1 TTTGTCTCGCTTGAGACAGTTTCTCTTGAAACA-AAT
* * **
25386 ----AC-C-TTTGAGATTGTTTCTCTTGAAACAAAT
1 TTTGTCTCGCTTGAGACAGTTTCTCTTGAAACAAAT
* *
25416 TTTGTCTCGCTTGAAATAGTTTCTCTTGAAACATAA-
1 TTTGTCTCGCTTGAGACAGTTTCTCTTGAAACA-AAT
* * **
25452 ----AC-C-TTTGAGATTGTTTCTCTTGAAACAAAT
1 TTTGTCTCGCTTGAGACAGTTTCTCTTGAAACAAAT
* * *
25482 TTCGTCTTGCTTGAGACAATTTCTCTTGAAA
1 TTTGTCTCGCTTGAGACAGTTTCTCTTGAAA
25513 TATAAACCTT
Statistics
Matches: 124, Mismatches: 23, Indels: 32
0.69 0.13 0.18
Matches are distributed among these distances:
29 4 0.03
30 42 0.34
31 1 0.01
32 2 0.02
34 2 0.02
35 1 0.01
36 68 0.55
37 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (36 bp):
TTTGTCTCGCTTGAGACAGTTTCTCTTGAAACAAAT
Found at i:25494 original size:21 final size:19
Alignment explanation
Indices: 25470--25509 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
25460 GATTGTTTCT
25470 CTTGAAACAAATTTCGTCTTG
1 CTTGAAAC-AATTTC-TCTTG
*
25491 CTTGAGACAATTTCTCTTG
1 CTTGAAACAATTTCTCTTG
25510 AAATATAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (19 bp):
CTTGAAACAATTTCTCTTG
Found at i:25598 original size:132 final size:131
Alignment explanation
Indices: 25333--25611 Score: 380
Period size: 132 Copynumber: 2.1 Consensus size: 131
25323 CTTGAGACAT
* * *
25333 TTTCTCTTAAAACAAATTTTGTCTAGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGATT
1 TTTCTCTTGAAACAAATTTCGTCTAGCTTGAGACAATTTCTCTTGAAACATAAACCTTTGAGATT
* * * * * * *
25398 GTTTCTCTTGAAACAAATTTTGTCTCGCTTGAAATAGTTTCTCTTGAAACATAAACCTTTGAGAT
66 GTTTCTCTTAAAACAAATTTCGTCTCGCTTGAAACAGTTTCCCTTGAAACACAAA-CTTTCAAAT
25463 TG
130 TG
* *
25465 TTTCTCTTGAAACAAATTTCGTCTTGCTTGAGACAATTTCTCTTGAAATATAAACCTTTGAGATT
1 TTTCTCTTGAAACAAATTTCGTCTAGCTTGAGACAATTTCTCTTGAAACATAAACCTTTGAGATT
* * *
25530 GTTTCTCTTAAAACAAAGTTTCGTCTCGCTTGAGACAGTTTCCCTTGAAGCCCAAA-TTTCAAAG
66 GTTTCTCTTAAAACAAA-TTTCGTCTCGCTTGAAACAGTTTCCCTTGAAACACAAACTTTCAAA-
25594 TTG
129 TTG
*
25597 TTTCACTTGAAACAA
1 TTTCTCTTGAAACAA
25612 GAAATTGATC
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
131 5 0.04
132 93 0.72
133 31 0.24
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (131 bp):
TTTCTCTTGAAACAAATTTCGTCTAGCTTGAGACAATTTCTCTTGAAACATAAACCTTTGAGATT
GTTTCTCTTAAAACAAATTTCGTCTCGCTTGAAACAGTTTCCCTTGAAACACAAACTTTCAAATT
G
Found at i:25753 original size:101 final size:98
Alignment explanation
Indices: 25522--25828 Score: 337
Period size: 101 Copynumber: 3.0 Consensus size: 98
25512 ATATAAACCT
* * * *
25522 TTGAGATTGTTTCTCTTAAAACAAAGTTTCGTCTCGCTTGAGAC-AGTTTCCCTTGAAGCCCAAA
1 TTGAGATTGTTT-TCCTAAAA-AAAATTTCGTCTCGCTTGAGACAATTTTCCCTTGAA--ACAAA
* * *
25586 TTTCAAAGTTGTTTCACTTGAAACAAGAAATTGATCTCAT
62 TTTGAAA-TTGTTTCACTTGAAAC-A-AAATTTATCTCAC
* *
25626 TTGAGATTGTTTTCCTAAAACCAAATTTCGTCTCACTTGAGACAATTTTCCCTTGAAACATAATT
1 TTGAGATTGTTTTCCTAAAA-AAAATTTCGTCTCGCTTGAGACAATTTTCCCTTGAAACA-AATT
*
25691 GTGAAAATGTTTCACTTGAAACAAAATTTATCTCAC
64 -TGAAATTGTTTCACTTGAAACAAAATTTATCTCAC
* * *
25727 TTGAGATTGTTTTCCTAAAAATAAATTTCGTCTCGCTTGAAATAGTTTTCCCTTGAAACGCAAAT
1 TTGAGATTGTTTTCCTAAAAA-AAATTTCGTCTCGCTTGAGACAATTTTCCCTTGAAA--CAAA-
**
25792 TTTGAAATTGTTTCACTCAAAACAAAATTTTATCTCA
62 TTTGAAATTGTTTCACTTGAAACAAAA-TTTATCTCA
25829 GCTGAGACAG
Statistics
Matches: 177, Mismatches: 18, Indels: 17
0.83 0.08 0.08
Matches are distributed among these distances:
101 63 0.36
102 27 0.15
103 59 0.33
104 28 0.16
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.37
Consensus pattern (98 bp):
TTGAGATTGTTTTCCTAAAAAAAATTTCGTCTCGCTTGAGACAATTTTCCCTTGAAACAAATTTG
AAATTGTTTCACTTGAAACAAAATTTATCTCAC
Found at i:32780 original size:6 final size:6
Alignment explanation
Indices: 32765--32824 Score: 63
Period size: 6 Copynumber: 10.5 Consensus size: 6
32755 CGGTGGTGGG
* * *
32765 GGAGGA GGAGGT GGAGGT GGAGGC GGAGGC GGAGGC GGAGGC ---GGC
1 GGAGGC GGAGGC GGAGGC GGAGGC GGAGGC GGAGGC GGAGGC GGAGGC
*
32810 GGAGGA GGAGGC GGA
1 GGAGGC GGAGGC GGA
32825 CTTGTGTTAG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
3 3 0.06
6 44 0.94
ACGTcount: A:0.20, C:0.10, G:0.67, T:0.03
Consensus pattern (6 bp):
GGAGGC
Found at i:32812 original size:15 final size:15
Alignment explanation
Indices: 32765--32823 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
32755 CGGTGGTGGG
* *
32765 GGAGGAGGAGGTGGA
1 GGAGGAGGAGGCGGC
* * *
32780 GGTGGAGGCGGAGGC
1 GGAGGAGGAGGCGGC
*
32795 GGAGGCGGAGGCGGC
1 GGAGGAGGAGGCGGC
32810 GGAGGAGGAGGCGG
1 GGAGGAGGAGGCGG
32824 ACTTGTGTTA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.19, C:0.10, G:0.68, T:0.03
Consensus pattern (15 bp):
GGAGGAGGAGGCGGC
Found at i:32821 original size:21 final size:21
Alignment explanation
Indices: 32768--32824 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
32758 TGGTGGGGGA
* * *
32768 GGAGGAGGTGGAGGTGGAGGC
1 GGAGGAGGAGGCGGAGGAGGC
* *
32789 GGAGGCGGAGGCGGAGGCGGC
1 GGAGGAGGAGGCGGAGGAGGC
32810 GGAGGAGGAGGCGGA
1 GGAGGAGGAGGCGGA
32825 CTTGTGTTAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.19, C:0.11, G:0.67, T:0.04
Consensus pattern (21 bp):
GGAGGAGGAGGCGGAGGAGGC
Found at i:33403 original size:29 final size:29
Alignment explanation
Indices: 33370--33444 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 29
33360 TTAGTATTCA
*
33370 GGTCGGTTTTTTTAAAAATTTTGGGATCG
1 GGTCGGTTTTTTTAAAAATTTCGGGATCG
* *
33399 GGTCGGATATTTTTAAAAATTTCGGGTTCG
1 GGTCGG-TTTTTTTAAAAATTTCGGGATCG
33429 GGTCAGGTTTTTTTAA
1 GGTC-GGTTTTTTTAA
33445 GTGTGATATT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 6 0.15
30 32 0.80
31 2 0.05
ACGTcount: A:0.21, C:0.08, G:0.27, T:0.44
Consensus pattern (29 bp):
GGTCGGTTTTTTTAAAAATTTCGGGATCG
Found at i:34035 original size:16 final size:16
Alignment explanation
Indices: 34014--34064 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 16
34004 GTTTCAGATT
*
34014 CAGATTCCAATTCCTA
1 CAGATTCTAATTCCTA
*
34030 CAGATTATAATTCCTTCA
1 CAGATTCTAATTCC-T-A
34048 CAGATTCTAATTTCCTA
1 CAGATTCTAA-TTCCTA
34065 AGAAATATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
16 12 0.41
17 2 0.07
18 11 0.38
19 4 0.14
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.37
Consensus pattern (16 bp):
CAGATTCTAATTCCTA
Found at i:37193 original size:15 final size:15
Alignment explanation
Indices: 37173--37203 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37163 CAACAAATAG
37173 AATTTTTATATAAAT
1 AATTTTTATATAAAT
*
37188 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
37203 A
1 A
37204 TTTAGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTTTATATAAAT
Found at i:37384 original size:20 final size:20
Alignment explanation
Indices: 37359--37414 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
37349 ATCCTATTCT
37359 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTTTATTCCCA
37379 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTTTATTCCCA
*
37399 CTGGTAATCTTATATT
1 CTGGTAATCTTTTATT
37415 TCGTGAACCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.46
Consensus pattern (20 bp):
CTGGTAATCTTTTATTCCCA
Found at i:44006 original size:4 final size:4
Alignment explanation
Indices: 43997--44042 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
43987 CATTTTAATT
43997 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
44043 CTCATCTCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:45730 original size:12 final size:12
Alignment explanation
Indices: 45713--45795 Score: 78
Period size: 12 Copynumber: 6.9 Consensus size: 12
45703 ACGGAGATAT
*
45713 CAGAAATCAAAA
1 CAGAAATCAGAA
*
45725 CAGAAATCAAAA
1 CAGAAATCAGAA
* * *
45737 CAGAATTCATAT
1 CAGAAATCAGAA
*
45749 CAGATATCAGAA
1 CAGAAATCAGAA
*
45761 CAG-AATCCAGAT
1 CAGAAAT-CAGAA
45773 CAGAAATCAGAA
1 CAGAAATCAGAA
*
45785 CAGAATTCAGA
1 CAGAAATCAGA
45796 TAATGTATCA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
11 2 0.03
12 53 0.91
13 3 0.05
ACGTcount: A:0.53, C:0.18, G:0.13, T:0.16
Consensus pattern (12 bp):
CAGAAATCAGAA
Found at i:45740 original size:24 final size:24
Alignment explanation
Indices: 45713--45831 Score: 89
Period size: 24 Copynumber: 5.0 Consensus size: 24
45703 ACGGAGATAT
* *
45713 CAGAAATCAAAACAGAAATCAAAA
1 CAGAAATCAAATCAGAAATCAGAA
* * *
45737 CAGAATTCATATCAGATATCAGAA
1 CAGAAATCAAATCAGAAATCAGAA
*
45761 CAG-AATCCAGATCAGAAATCAGAA
1 CAGAAAT-CAAATCAGAAATCAGAA
* * * * *
45785 CAGAATTCAGATAATG-TATCATAA
1 CAGAAATCAAATCA-GAAATCAGAA
* *
45809 CAGAATTCAAGTCAGAAATCAGA
1 CAGAAATCAAATCAGAAATCAGA
45832 TAAAATATTT
Statistics
Matches: 74, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
23 3 0.04
24 68 0.92
25 3 0.04
ACGTcount: A:0.51, C:0.17, G:0.13, T:0.18
Consensus pattern (24 bp):
CAGAAATCAAATCAGAAATCAGAA
Found at i:45830 original size:48 final size:48
Alignment explanation
Indices: 45717--45831 Score: 137
Period size: 48 Copynumber: 2.4 Consensus size: 48
45707 AGATATCAGA
* * * *
45717 AATCAA-AACAGAAATCAAAACAGAATTCATATCAGATATCAGAACAG
1 AATCAAGATCAGAAATCAGAACAGAATTCAGATAAGATATCAGAACAG
* *
45764 AATCCAGATCAGAAATCAGAACAGAATTCAGATAATG-TATCATAACAG
1 AATCAAGATCAGAAATCAGAACAGAATTCAGATAA-GATATCAGAACAG
45812 AATTCAAG-TCAGAAATCAGA
1 AA-TCAAGATCAGAAATCAGA
45832 TAAAATATTT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
47 5 0.09
48 48 0.83
49 5 0.09
ACGTcount: A:0.51, C:0.17, G:0.13, T:0.19
Consensus pattern (48 bp):
AATCAAGATCAGAAATCAGAACAGAATTCAGATAAGATATCAGAACAG
Found at i:48907 original size:12 final size:12
Alignment explanation
Indices: 48890--48968 Score: 70
Period size: 12 Copynumber: 6.6 Consensus size: 12
48880 GAGATATCAA
*
48890 AAATCAAAACAG
1 AAATCAGAACAG
*
48902 AAATCAAAACAG
1 AAATCAGAACAG
* * *
48914 AATTCATATCAG
1 AAATCAGAACAG
*
48926 ATATCAGAACAG
1 AAATCAGAACAG
*
48938 -AATCCAGATCAG
1 AAAT-CAGAACAG
48950 AAATCAGAACAG
1 AAATCAGAACAG
*
48962 AATTCAG
1 AAATCAG
48969 GTAATGTATC
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
11 2 0.04
12 49 0.91
13 3 0.06
ACGTcount: A:0.53, C:0.18, G:0.13, T:0.16
Consensus pattern (12 bp):
AAATCAGAACAG
Found at i:48931 original size:24 final size:24
Alignment explanation
Indices: 48899--48968 Score: 104
Period size: 24 Copynumber: 2.9 Consensus size: 24
48889 AAAATCAAAA
* *
48899 CAGAAATCAAAACAGAATTCATAT
1 CAGAAATCAGAACAGAATTCAGAT
* *
48923 CAGATATCAGAACAGAATCCAGAT
1 CAGAAATCAGAACAGAATTCAGAT
48947 CAGAAATCAGAACAGAATTCAG
1 CAGAAATCAGAACAGAATTCAG
48969 GTAATGTATC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.50, C:0.19, G:0.14, T:0.17
Consensus pattern (24 bp):
CAGAAATCAGAACAGAATTCAGAT
Found at i:48979 original size:48 final size:48
Alignment explanation
Indices: 48899--49005 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 48
48889 AAAATCAAAA
* * *
48899 CAGAAATCAAAACAGAATTCATATCAGATATCAGAACAGAATCC-AGAT
1 CAGAAATCAGAACAGAATTCAGATAAGATATCAGAACAGAATCCAAG-T
* * * *
48947 CAGAAATCAGAACAGAATTCAGGTAATG-TATCATAACATAATTCAAGT
1 CAGAAATCAGAACAGAATTCAGATAA-GATATCAGAACAGAATCCAAGT
48995 CAGAAATCAGA
1 CAGAAATCAGA
49006 TAAAATATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 47 0.94
49 3 0.06
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.21
Consensus pattern (48 bp):
CAGAAATCAGAACAGAATTCAGATAAGATATCAGAACAGAATCCAAGT
Found at i:49003 original size:24 final size:24
Alignment explanation
Indices: 48899--49005 Score: 94
Period size: 24 Copynumber: 4.5 Consensus size: 24
48889 AAAATCAAAA
*
48899 CAGAAATCAAAACAGAATTCATA-T
1 CAGAAATCAGAACAGAATTCA-AGT
* *
48923 CAGATATCAGAACAGAA-TCCAGAT
1 CAGAAATCAGAACAGAATTCAAG-T
*
48947 CAGAAATCAGAACAGAATTCAGGT
1 CAGAAATCAGAACAGAATTCAAGT
* * * *
48971 AATG-TATCATAACATAATTCAAGT
1 CA-GAAATCAGAACAGAATTCAAGT
48995 CAGAAATCAGA
1 CAGAAATCAGA
49006 TAAAATATTT
Statistics
Matches: 64, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
22 1 0.02
23 3 0.05
24 56 0.88
25 4 0.06
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.21
Consensus pattern (24 bp):
CAGAAATCAGAACAGAATTCAAGT
Found at i:51944 original size:2 final size:2
Alignment explanation
Indices: 51937--51995 Score: 109
Period size: 2 Copynumber: 29.5 Consensus size: 2
51927 TTTTTAAAAC
51937 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
51979 AT AT AT AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT A
51996 CCCCCATCCG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:52262 original size:24 final size:24
Alignment explanation
Indices: 52162--52264 Score: 70
Period size: 24 Copynumber: 4.3 Consensus size: 24
52152 GAGATATCAA
*
52162 AAATCAAAACAGAATTCATA-TCAG
1 AAATCAGAACAGAATTCA-AGTCAG
* * *
52186 ATATCAGAA-A-AAATCCAGATCAG
1 AAATCAGAACAGAATTCAAG-TCAG
* * *
52209 AAATCAGAACATAATTCAGGTAATG
1 AAATCAGAACAGAATTCAAGTCA-G
* *
52234 -TATCATAACAGAATTCAAGTCAG
1 AAATCAGAACAGAATTCAAGTCAG
52257 AAATCAGA
1 AAATCAGA
52265 TAAAATATTT
Statistics
Matches: 57, Mismatches: 16, Indels: 12
0.67 0.19 0.14
Matches are distributed among these distances:
21 1 0.02
22 4 0.07
23 14 0.25
24 32 0.56
25 6 0.11
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.21
Consensus pattern (24 bp):
AAATCAGAACAGAATTCAAGTCAG
Found at i:55202 original size:2 final size:2
Alignment explanation
Indices: 55195--55227 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
55185 TTTTTAAAAC
55195 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
55228 CCCCCATCCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:55448 original size:24 final size:24
Alignment explanation
Indices: 55389--55450 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
55379 AAACGGAGAT
* * *
55389 ATCAGAAATCAAAACAGAATTCAT
1 ATCAGAAATCAGAACAGAATCCAG
55413 ATCA-AATATCAGAACAGAATCCAG
1 ATCAGAA-ATCAGAACAGAATCCAG
55437 ATCAGAAATCAGAA
1 ATCAGAAATCAGAA
55451 TAAAATTCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 2 0.06
24 29 0.88
25 2 0.06
ACGTcount: A:0.53, C:0.18, G:0.11, T:0.18
Consensus pattern (24 bp):
ATCAGAAATCAGAACAGAATCCAG
Found at i:55495 original size:24 final size:24
Alignment explanation
Indices: 55390--55497 Score: 80
Period size: 24 Copynumber: 4.5 Consensus size: 24
55380 AACGGAGATA
*
55390 TCAGAAATCAAAACAGAATTCATA-
1 TCAGAAATCAGAACAGAATTCA-AG
*
55414 TCA-AATATCAGAACAGAA-TCCAG
1 TCAGAA-ATCAGAACAGAATTCAAG
* * *
55437 ATCAGAAATCAGAATAAAATTCAGG
1 -TCAGAAATCAGAACAGAATTCAAG
* * *
55462 TAATG-TATCATAACAGAATTCAAG
1 TCA-GAAATCAGAACAGAATTCAAG
55486 TCAGAAATCAGA
1 TCAGAAATCAGA
55498 TAAAATATTT
Statistics
Matches: 62, Mismatches: 15, Indels: 14
0.68 0.16 0.15
Matches are distributed among these distances:
22 1 0.02
23 5 0.08
24 50 0.81
25 6 0.10
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.21
Consensus pattern (24 bp):
TCAGAAATCAGAACAGAATTCAAG
Found at i:57749 original size:16 final size:17
Alignment explanation
Indices: 57728--57760 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
57718 CGAAAACATA
*
57728 AAATAT-GACTTTTCGG
1 AAATATGGAATTTTCGG
57744 AAATATGGAATTTTCGG
1 AAATATGGAATTTTCGG
57761 TCAAAATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.36
Consensus pattern (17 bp):
AAATATGGAATTTTCGG
Found at i:58670 original size:24 final size:24
Alignment explanation
Indices: 58611--58672 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
58601 AAACGGAGAT
* * *
58611 ATCAGAAATCAAAACAGAATTCAT
1 ATCAGAAATCAGAACAGAATCCAG
58635 ATCA-AATATCAGAACAGAATCCAG
1 ATCAGAA-ATCAGAACAGAATCCAG
58659 ATCAGAAATCAGAA
1 ATCAGAAATCAGAA
58673 TAAAATTCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 2 0.06
24 29 0.88
25 2 0.06
ACGTcount: A:0.53, C:0.18, G:0.11, T:0.18
Consensus pattern (24 bp):
ATCAGAAATCAGAACAGAATCCAG
Found at i:58717 original size:24 final size:24
Alignment explanation
Indices: 58612--58719 Score: 80
Period size: 24 Copynumber: 4.5 Consensus size: 24
58602 AACGGAGATA
*
58612 TCAGAAATCAAAACAGAATTCATA-
1 TCAGAAATCAGAACAGAATTCA-AG
*
58636 TCA-AATATCAGAACAGAA-TCCAG
1 TCAGAA-ATCAGAACAGAATTCAAG
* * *
58659 ATCAGAAATCAGAATAAAATTCAGG
1 -TCAGAAATCAGAACAGAATTCAAG
* * *
58684 TAATG-TATCATAACAGAATTCAAG
1 TCA-GAAATCAGAACAGAATTCAAG
58708 TCAGAAATCAGA
1 TCAGAAATCAGA
58720 TAAAATATTT
Statistics
Matches: 62, Mismatches: 15, Indels: 14
0.68 0.16 0.15
Matches are distributed among these distances:
22 1 0.02
23 5 0.08
24 50 0.81
25 6 0.10
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.21
Consensus pattern (24 bp):
TCAGAAATCAGAACAGAATTCAAG
Found at i:61852 original size:24 final size:23
Alignment explanation
Indices: 61825--61884 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 23
61815 GTAAACGGAG
61825 ATATCAGAAATCAAAACAAAATTC
1 ATATCAGAAATCAAAACAAAA-TC
* * *
61849 ATATCAGATATCATAACAGAATC
1 ATATCAGAAATCAAAACAAAATC
* *
61872 AGAACAGAAATCA
1 ATATCAGAAATCA
61885 GAGTAGAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 12 0.40
24 18 0.60
ACGTcount: A:0.55, C:0.17, G:0.08, T:0.20
Consensus pattern (23 bp):
ATATCAGAAATCAAAACAAAATC
Found at i:61932 original size:24 final size:24
Alignment explanation
Indices: 61828--61932 Score: 56
Period size: 24 Copynumber: 4.4 Consensus size: 24
61818 AACGGAGATA
* *
61828 TCAGAAATCAAAACAAAATTCATA-
1 TCAGAAATCATAACAGAATTCA-AG
*
61852 TCAGATATCATAACAGAA-TC-AG
1 TCAGAAATCATAACAGAATTCAAG
* * ** *
61874 AACAGAAATCAGAGTAGAATTCAGG
1 -TCAGAAATCATAACAGAATTCAAG
* * *
61899 TAATG-TATCATAATAGAATTCAAG
1 TCA-GAAATCATAACAGAATTCAAG
61923 TCAGAAATCA
1 TCAGAAATCA
61933 GATAAAATAT
Statistics
Matches: 58, Mismatches: 17, Indels: 12
0.67 0.20 0.14
Matches are distributed among these distances:
21 1 0.02
23 16 0.28
24 39 0.67
25 2 0.03
ACGTcount: A:0.50, C:0.14, G:0.13, T:0.23
Consensus pattern (24 bp):
TCAGAAATCATAACAGAATTCAAG
Found at i:64341 original size:10 final size:8
Alignment explanation
Indices: 64318--64364 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 8
64308 TCAAAGGTTT
64318 GGTCAACAG
1 GGTCAAC-G
64327 TGGTCAACG
1 -GGTCAACG
64336 CCGGTCAACG
1 --GGTCAACG
64346 GGTCAAC-
1 GGTCAACG
64353 GGTCAACG
1 GGTCAACG
64361 GGTC
1 GGTC
64365 GGGTCGGGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
7 7 0.21
8 11 0.32
9 1 0.03
10 15 0.44
ACGTcount: A:0.23, C:0.28, G:0.34, T:0.15
Consensus pattern (8 bp):
GGTCAACG
Found at i:64383 original size:18 final size:18
Alignment explanation
Indices: 64360--64409 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
64350 AACGGTCAAC
64360 GGGTCGGGTCGGGTAAAA
1 GGGTCGGGTCGGGTAAAA
* * *
64378 GGGTCGGGTCAGGTCAAC
1 GGGTCGGGTCGGGTAAAA
64396 GGGTCGGGTCGGGT
1 GGGTCGGGTCGGGT
64410 TGTGACCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.14, C:0.16, G:0.52, T:0.18
Consensus pattern (18 bp):
GGGTCGGGTCGGGTAAAA
Found at i:65296 original size:124 final size:124
Alignment explanation
Indices: 65155--65409 Score: 397
Period size: 124 Copynumber: 2.1 Consensus size: 124
65145 TTACACATTA
**
65155 AAATAATATTGGTATTTCTATA-CTTTTAG-ATTTTTTTAAAAAAAATATGAAACAATTTCTTTA
1 AAATAATATTGACATTTCTATATC-TTTAGAATTTTTTT-AAAAAAATATGAAACAATTTCTTTA
* *
65218 TTTTTAATTAATGAAGAAAGTAACTCCCTAGTTGTGTTTAGGGAATCATTTCTTATAATTG
64 TTTTTAATTAATGAAGAAAGTAACTCCCTAGTTGTGTTTAGGGAATCAATTATTATAATTG
* * *
65279 AAATAATATTGACATTTCTATATCTTTAGAATTTTTTTTAAAAAATATGATACAATTTGTTTATT
1 AAATAATATTGACATTTCTATATCTTTAGAATTTTTTTAAAAAAATATGAAACAATTTCTTTATT
*
65344 TTTAATTAATGAATAAAGTAACTCCCTAGTTGTGTTTAGGGAATCAATTATTATAATTG
66 TTTAATTAATGAAGAAAGTAACTCCCTAGTTGTGTTTAGGGAATCAATTATTATAATTG
*
65403 AATTAAT
1 AAATAAT
65410 TTTTTTAAAT
Statistics
Matches: 120, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
124 111 0.93
125 9 0.08
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.45
Consensus pattern (124 bp):
AAATAATATTGACATTTCTATATCTTTAGAATTTTTTTAAAAAAATATGAAACAATTTCTTTATT
TTTAATTAATGAAGAAAGTAACTCCCTAGTTGTGTTTAGGGAATCAATTATTATAATTG
Found at i:69099 original size:20 final size:19
Alignment explanation
Indices: 69049--69100 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
69039 ATAAATAATC
69049 TAAAATTAACAAC-CATATA
1 TAAAATTAA-AACACATATA
*
69068 TAATAATT-AAACACATTTAA
1 TAA-AATTAAAACACATAT-A
69088 TAAAATTAAAACA
1 TAAAATTAAAACA
69101 AATGGTATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 3 0.11
19 12 0.43
20 13 0.46
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.29
Consensus pattern (19 bp):
TAAAATTAAAACACATATA
Found at i:70630 original size:29 final size:29
Alignment explanation
Indices: 70596--70659 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
70586 AAAAATGTAG
70596 TTAATTCGGTTCGGTTAATAATTTTCAAA
1 TTAATTCGGTTCGGTTAATAATTTTCAAA
70625 TTAATTCGGTTCGGTTAATAATTTTCAAA
1 TTAATTCGGTTCGGTTAATAATTTTCAAA
*
70654 TAAATT
1 TTAATT
70660 TTGGTTCGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.45
Consensus pattern (29 bp):
TTAATTCGGTTCGGTTAATAATTTTCAAA
Found at i:70738 original size:137 final size:139
Alignment explanation
Indices: 70582--70903 Score: 452
Period size: 137 Copynumber: 2.3 Consensus size: 139
70572 CAATTAATGG
*
70582 TTAAAAAAATGTAGTTAATTCGGTTCGGTTAATAATTTTCAAATTAATTCGGTTCGGTTAATAAT
1 TTAAAAAAAT-CAGTTAATTCGGTTCGGTTAATAATTTTCAAATTAATTCGGTTCGGTTAATAAT
*
70647 TTTCAAATAAATTTTGGTTCGATTAACCAAACTGAATTAACCAAATTTTTGCTTCGATTAATT-T
65 TTTCAAATAAATTTTGGTTCGATTAACCAAACTGAATTAACCAAATTTTTGCTTCGATTAATTCA
70711 GATTAATAA-T
130 G-TTAATAATT
* * * *
70721 TT-AAAAAATCAGTTAATTCGGTTCAGTTAATAATTTTTAAATTAATTTGGTTCGGTTAATATTT
1 TTAAAAAAATCAGTTAATTCGGTTCGGTTAATAATTTTCAAATTAATTCGGTTCGGTTAATAATT
* * * * * *
70785 TTCAAATACATTTTTGTTCTATTAACCGAACTGAATTAACCGATTTTTTGCTTCGATTAATTCAG
66 TTCAAATAAATTTTGGTTCGATTAACCAAACTGAATTAACCAAATTTTTGCTTCGATTAATTCAG
70850 TTAATAATTT
131 TTAATAA-TT
* * *
70860 TTAAAAAAAATCGGTTAATTCAGTTTGGTTAATAATTTTCAAAT
1 TT-AAAAAAATCAGTTAATTCGGTTCGGTTAATAATTTTCAAAT
70904 GAACCGTATT
Statistics
Matches: 161, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
137 113 0.70
138 8 0.05
139 5 0.03
141 35 0.22
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.43
Consensus pattern (139 bp):
TTAAAAAAATCAGTTAATTCGGTTCGGTTAATAATTTTCAAATTAATTCGGTTCGGTTAATAATT
TTCAAATAAATTTTGGTTCGATTAACCAAACTGAATTAACCAAATTTTTGCTTCGATTAATTCAG
TTAATAATT
Found at i:70797 original size:29 final size:29
Alignment explanation
Indices: 70733--70791 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
70723 AAAAAATCAG
*
70733 TTAATTCGGTTCAGTTAATAATTTTTAAA
1 TTAATTTGGTTCAGTTAATAATTTTTAAA
*
70762 TTAATTTGGTTCGGTTAAT-ATTTTTCAAA
1 TTAATTTGGTTCAGTTAATAATTTTT-AAA
70791 T
1 T
70792 ACATTTTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.51
Consensus pattern (29 bp):
TTAATTTGGTTCAGTTAATAATTTTTAAA
Found at i:75653 original size:17 final size:18
Alignment explanation
Indices: 75624--75662 Score: 71
Period size: 17 Copynumber: 2.2 Consensus size: 18
75614 ATAAAACGAT
75624 ACAACTAAAATAATAAAA
1 ACAACTAAAATAATAAAA
75642 ACAACT-AAATAATAAAA
1 ACAACTAAAATAATAAAA
75659 ACAA
1 ACAA
75663 GTCGAACAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.72, C:0.13, G:0.00, T:0.15
Consensus pattern (18 bp):
ACAACTAAAATAATAAAA
Found at i:75871 original size:3 final size:3
Alignment explanation
Indices: 75865--75891 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
75855 CTCCTCACTC
75865 TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA
75892 CCAAGAGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
TCA
Found at i:77427 original size:2 final size:2
Alignment explanation
Indices: 77420--77466 Score: 85
Period size: 2 Copynumber: 23.0 Consensus size: 2
77410 AAGTAATGCG
77420 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77462 GTA TA
1 -TA TA
77467 ACACATGCTA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 42 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:78026 original size:11 final size:11
Alignment explanation
Indices: 78010--78045 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
78000 GAAACCGGCG
78010 GGTTAATATAC
1 GGTTAATATAC
78021 GGTTAATATAC
1 GGTTAATATAC
*
78032 AGTTAATATAC
1 GGTTAATATAC
78043 GGT
1 GGT
78046 GTTACTGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.36
Consensus pattern (11 bp):
GGTTAATATAC
Found at i:78434 original size:20 final size:19
Alignment explanation
Indices: 78397--78457 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
78387 GTATCGATCC
*
78397 AAAATGAT-ATACCAGGTAA
1 AAAATGATAAAACC-GGTAA
*
78416 AAATATGATAAAACGGGTAA
1 AAA-ATGATAAAACCGGTAA
78436 GAAAATGATAAAACCGGTAA
1 -AAAATGATAAAACCGGTAA
78456 AA
1 AA
78458 CGTTACCGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 5 0.14
20 25 0.69
21 6 0.17
ACGTcount: A:0.56, C:0.08, G:0.18, T:0.18
Consensus pattern (19 bp):
AAAATGATAAAACCGGTAA
Found at i:78535 original size:181 final size:182
Alignment explanation
Indices: 78199--78671 Score: 700
Period size: 181 Copynumber: 2.6 Consensus size: 182
78189 GATCCAAATT
* * * *
78199 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCAGTATTG-AAATGAT
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTA-TGAAAATGAT
* * * * *
78263 AAAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTT
65 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
* *
78328 CGTGAATTTAAAAGAGAAGCAGTTTTAAG-TCCTATAAAGTGTCGATACTTTTA
130 CGTGAATTTAAAAGAGAAGCAGTTTT-AGCGCCTATAAAGTGTCGATACTTTAA
* * * *
78381 AAAAATGTATCGATCCAAAATGATATACCAGGTAAAAATATGATAAAACGGGTAAGAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATGAAAATGATA
* *
78446 AAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
* *
78510 GTGAATTTAAAAGAGAATCAGTTTTAGCGCCTATAATGTGTCGATACTTTAA
131 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAA
* * *
78562 AAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATGAAAATGATA
*
78627 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
78672 CGTAAGTACG
Statistics
Matches: 262, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
180 2 0.01
181 165 0.63
182 95 0.36
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.27
Consensus pattern (182 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATGAAAATGATA
AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAA
Found at i:78615 original size:20 final size:19
Alignment explanation
Indices: 78592--78638 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
78582 CGATATAACA
78592 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
78612 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
78632 GGTAAAA
1 GGTAAAA
78639 TGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:78640 original size:17 final size:19
Alignment explanation
Indices: 78601--78643 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
78591 AGGTAAAAAT
78601 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
78621 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
78638 ATGATA
1 ATGATA
78644 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:80946 original size:182 final size:184
Alignment explanation
Indices: 80634--81023 Score: 696
Period size: 182 Copynumber: 2.1 Consensus size: 184
80624 TAAAAAAGTG
* *
80634 TCGACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATATCA
1 TCGACACTTTCTAATATTGTGTCGATACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCA
* *
80699 TTTAAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
66 TTTAAAAAAGTATCGACATTTACACATCAGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
*
80764 TATAACCGGTATAAATATATCGGTTTTATGAGCGAATAGGTC-TACAACCTATA
131 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTTACAACCTATA
*
80817 TCGGCACTTTCTAATATTGTGTCGATACTTTATGTCCAGATTGGAAG-AAAATGTGTCGATACCA
1 TCGACACTTTCTAATATTGTGTCGATACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCA
80881 TTTAAAAAAGTATCGACATTTACACATCAGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
66 TTTAAAAAAGTATCGACATTTACACATCAGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
80946 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTTACAACCTATA
131 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTTACAACCTATA
81000 TCGACACGTTT-TAATATTGTGTCG
1 TCGACAC-TTTCTAATATTGTGTCG
81024 GTAATTTTAA
Statistics
Matches: 198, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
182 120 0.61
183 75 0.38
184 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (184 bp):
TCGACACTTTCTAATATTGTGTCGATACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCA
TTTAAAAAAGTATCGACATTTACACATCAGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTTACAACCTATA
Found at i:83516 original size:25 final size:25
Alignment explanation
Indices: 83488--83552 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
83478 TTATCATTAA
83488 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
83513 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
83538 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
83553 TCTTTTGAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:83927 original size:23 final size:23
Alignment explanation
Indices: 83896--83968 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
83886 ATAGGTAAAA
* *
83896 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCGCTT
*
83919 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
83942 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
83965 ATAT
1 ATAT
83969 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:84416 original size:23 final size:23
Alignment explanation
Indices: 84385--84457 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
84375 ATAGGTAAAA
*
84385 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
84408 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
84431 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
84454 ATAT
1 ATAT
84458 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:84899 original size:23 final size:23
Alignment explanation
Indices: 84868--84940 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
84858 ATAGGTAAAA
*
84868 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
84891 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
84914 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
84937 ATAT
1 ATAT
84941 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:84965 original size:46 final size:45
Alignment explanation
Indices: 84868--84965 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
84858 ATAGGTAAAA
* * *
84868 ATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATAGCTATCCTTT
* *
84914 ATATAATGTAATAGGTAGTGCTTATAT-TGTAAAGTATCTATCCTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TAGCTATCCTTT
*
84960 TTATAA
1 ATATAA
84966 AAGTGTCCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATAGCTATCCTTT
Found at i:85385 original size:23 final size:23
Alignment explanation
Indices: 85354--85426 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
85344 ATAGGTAAAA
*
85354 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
85377 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
85400 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
85423 ATAT
1 ATAT
85427 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:85451 original size:46 final size:45
Alignment explanation
Indices: 85354--85451 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
85344 ATAGGTAAAA
* * *
85354 ATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATAGCTATCCTTT
* *
85400 ATATAATGTAATAGGTAGTGCTTATAT-TGTAAAGTATCTATCCTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TAGCTATCCTTT
*
85446 TTATAA
1 ATATAA
85452 AAGTGTCCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATAGCTATCCTTT
Found at i:85874 original size:23 final size:23
Alignment explanation
Indices: 85843--85915 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
85833 ATAGGTAAAA
*
85843 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
85866 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
85889 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
85912 ATAT
1 ATAT
85916 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:86361 original size:23 final size:23
Alignment explanation
Indices: 86330--86402 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
86320 ATAGGTAAAA
*
86330 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
86353 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
86376 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
86399 ATAT
1 ATAT
86403 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:86649 original size:974 final size:976
Alignment explanation
Indices: 83552--87526 Score: 7618
Period size: 974 Copynumber: 4.1 Consensus size: 976
83542 AGGTATATAC
83552 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
83617 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATA-TACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
83681 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
* *
83746 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACACGAAACACTATT-AAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* * *
83810 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATTCTTTTTATAAAAAGTATGAACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
* *
83875 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
*
83940 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTTCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
*
84005 CTTTTTTCACTGTGGAAAACATTAATTTAAGATTATCTTTTGAGTGAGTTTTAAGATATTAATTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
84070 AGTAATTATAGGCGTCTAATGATTTAGTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
521 AGTAATTATAGGCGTCTAATGATTTAGTTTTTACGTTACG--ATATATTATTATTAAATTAAAAA
84135 CAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAA
584 CAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAA
84200 ATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAA
649 ATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAA
*
84265 TATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAATTTTAAAA
714 TATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAA
84330 AAAGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
779 AAAGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
84395 ATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGCTTATATTG
844 ATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGCTTATATTG
*
84460 TAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAG
909 TAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAG
84525 GTT
974 GTT
84528 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
84593 GTTACG--ATATA-TATTATT-AATTAAAAACAATAAAC--ATATATTACATATTTATTATTATT
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
84652 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
84717 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
84782 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
84847 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
84912 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
84977 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
85042 AGTAATTATAGGCGTCTAATGATTTAGTTTTTACGTTACGATATATTATTATTAAATTAAAAACA
521 AGTAATTATAGGCGTCTAATGATTTAGTTTTTACGTTACGATATATTATTATTAAATTAAAAACA
85107 ATAAACATATATATTACATA-TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAAT
586 ATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAAT
85171 ATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATA
651 ATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATA
85236 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAA
716 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAA
85301 AGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAAT
781 AGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAAT
85366 AGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGCTTATATTGTA
846 AGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGCTTATATTGTA
85431 AAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGT
911 AAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGT
85496 T
976 T
*
85497 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAGTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
85562 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
85627 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
85692 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
85757 AAATTGAAACATAAATTACATAATTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
85822 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
*
85887 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
85952 C-TTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
*
86016 AGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
521 AGTAATTATAGGCGTCTAATGATTTAGTTTTTACGTTACG--ATATATTATTATTAAATTAAAAA
86081 CAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAA
584 CAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAA
86146 ATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAA
649 ATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAA
86211 TATTGTAGGTGGAAAACATGAAACACTATT-AAAAAATTGAAACATAAATTACATAACTTTAAAA
714 TATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAA
86275 AAAGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
779 AAAGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
86340 ATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGCTTATATTG
844 ATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGCTTATATTG
86405 TAAAGTATCTATCC-TTTTAT-AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAG
909 TAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAG
86468 GTT
974 GTT
*
86471 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAGTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
86536 GTTACGATATATATCATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATT
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
86601 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
86666 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
86731 AAATTGAAACATAAATTACATAATTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
86796 CTTTCAATATAATAGGT-AAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
*
86860 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
86925 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
*
86990 AGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATTATTATTAAATTAAAAACA
521 AGTAATTATAGGCGTCTAATGATTTAGTTTTTACGTTACGATATATTATTATTAAATTAAAAACA
87055 ATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAAT
586 ATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAAT
87120 ATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATA
651 ATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATA
87185 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAA
716 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAA
87250 AGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAAT
781 AGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAAT
87315 AGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGCTTATATTGTA
846 AGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGCTTATATTGTA
87380 AAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGT
911 AAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGT
87445 T
976 T
87446 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
87511 GTTACGATATATATTA
66 GTTACGATATATATTA
87527 ACCTTTTTTA
Statistics
Matches: 2963, Mismatches: 21, Indels: 31
0.98 0.01 0.01
Matches are distributed among these distances:
969 438 0.15
970 50 0.02
971 146 0.05
972 503 0.17
973 315 0.11
974 602 0.20
975 478 0.16
976 294 0.10
977 137 0.05
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (976 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
AGTAATTATAGGCGTCTAATGATTTAGTTTTTACGTTACGATATATTATTATTAAATTAAAAACA
ATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAAT
ATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATA
TTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAA
AGTATTGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAAT
AGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGCTTATATTGTA
AAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGT
T
Found at i:86734 original size:487 final size:489
Alignment explanation
Indices: 83552--87526 Score: 7626
Period size: 486 Copynumber: 8.2 Consensus size: 489
83542 AGGTATATAC
83552 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
83617 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATA-TACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
83681 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
* *
83746 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACACGAAACACTATT-AAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* * *
83810 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATTCTTTTTATAAAAAGTATGAACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
* *
83875 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
*
83940 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTTCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
*
84005 CTTTTTTCACTGTGGAAAACATTAATTTAAGATT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
84039 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAGTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
84104 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
84169 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
84234 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
84299 AAATTGAAACATAAATTACATAATTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
84364 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
*
84429 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
84494 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
84528 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
84593 GTTACG--ATATA-TATTATT-AATTAAAAACAATAAAC--ATATATTACATATTTATTATTATT
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
84652 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
84717 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
84782 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
84847 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
84912 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
84977 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
85011 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAGTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
85076 GTTACG--ATATATTATTATTAAATTAAAAACAATAAACATATATATTACATA-TTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
85138 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
85203 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
85268 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
85333 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
85398 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
85463 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
85497 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAGTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
85562 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
85627 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
85692 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
85757 AAATTGAAACATAAATTACATAATTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
85822 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
*
85887 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
85952 C-TTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
85985 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
86050 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
86115 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
86180 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
86244 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
86309 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
86374 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCC-TTTTAT-AAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
86437 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
86471 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTAGTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
86536 GTTACGATATATATCATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATT
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
86601 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
86666 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
86731 AAATTGAAACATAAATTACATAATTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
86796 CTTTCAATATAATAGGT-AAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
*
86860 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
86925 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
86959 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
87024 GTTACG--ATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
87087 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
87152 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
87217 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
87282 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
87347 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
87412 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
87446 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
87511 GTTACGATATATATTA
66 GTTACGATATATATTA
87527 ACCTTTTTTA
Statistics
Matches: 3439, Mismatches: 33, Indels: 30
0.98 0.01 0.01
Matches are distributed among these distances:
483 455 0.13
484 7 0.00
485 47 0.01
486 1095 0.32
487 609 0.18
488 590 0.17
489 636 0.18
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (489 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATTGATCCTTTTTATAAAAAGTATGGACA
CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
CTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
Found at i:86842 original size:23 final size:23
Alignment explanation
Indices: 86816--86888 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
86806 AATAGGTAAA
*
86816 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
86839 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
86862 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
86885 ATAT
1 ATAT
86889 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:87334 original size:23 final size:23
Alignment explanation
Indices: 87303--87375 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
87293 ATAGGTAAAA
*
87303 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
87326 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
87349 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
87372 ATAT
1 ATAT
87376 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:87400 original size:46 final size:45
Alignment explanation
Indices: 87303--87400 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
87293 ATAGGTAAAA
* * *
87303 ATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATAGCTATCCTTT
* *
87349 ATATAATGTAATAGGTAGTGCTTATAT-TGTAAAGTATCTATCCTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TAGCTATCCTTT
*
87395 TTATAA
1 ATATAA
87401 AAGTGTCCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATAGCTATCCTTT
Found at i:89180 original size:2 final size:2
Alignment explanation
Indices: 89173--89205 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
89163 ATTAAAACTA
89173 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
89206 ATTTTTAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:90315 original size:21 final size:21
Alignment explanation
Indices: 90291--90338 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
90281 ATTTAATAAA
90291 ATAATAAATTATTGATTTATT
1 ATAATAAATTATTGATTTATT
*
90312 ATAATCAATTATTGATTTATT
1 ATAATAAATTATTGATTTATT
90333 ATAATA
1 ATAATA
90339 CAATAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (21 bp):
ATAATAAATTATTGATTTATT
Found at i:94756 original size:29 final size:29
Alignment explanation
Indices: 94721--94802 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
94711 AAACTAAATT
*
94721 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
94750 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
94779 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
94803 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:99465 original size:29 final size:29
Alignment explanation
Indices: 99430--99511 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
99420 AAACTAAATT
*
99430 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
99459 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
99488 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
99512 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:104170 original size:29 final size:29
Alignment explanation
Indices: 104135--104216 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
104125 AAACTAAATT
*
104135 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
104164 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
104193 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
104217 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:111515 original size:15 final size:15
Alignment explanation
Indices: 111495--111559 Score: 55
Period size: 15 Copynumber: 4.3 Consensus size: 15
111485 GATATATTCA
111495 ATTTTAAATTTATTT
1 ATTTTAAATTTATTT
*
111510 ATTTTAATTTTAATTAT
1 ATTTTAAATTT-ATT-T
111527 ATTATTAAAATTTA-TT
1 ATT-TT-AAATTTATTT
*
111543 AATTT-AATTT-TTT
1 ATTTTAAATTTATTT
111556 ATTT
1 ATTT
111560 AACTAGATTG
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
13 10 0.24
15 12 0.29
16 6 0.15
17 5 0.12
18 3 0.07
19 5 0.12
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTTAAATTTATTT
Found at i:117970 original size:13 final size:13
Alignment explanation
Indices: 117952--117994 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
117942 CAAAGTACGA
*
117952 ATAATATATATAT
1 ATAATAAATATAT
*
117965 ATAATAAATAAAT
1 ATAATAAATATAT
*
117978 AAAATAAATATAT
1 ATAATAAATATAT
117991 ATAA
1 ATAA
117995 ATTAATAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
ATAATAAATATAT
Found at i:117978 original size:24 final size:23
Alignment explanation
Indices: 117961--118009 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
117951 AATAATATAT
117961 ATATATAATAAATAAATAAAATAA
1 ATATAT-ATAAATAAATAAAATAA
* *
117985 ATATATATAAATTAATAAATTAA
1 ATATATATAAATAAATAAAATAA
118008 AT
1 AT
118010 GTCGAAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
ATATATATAAATAAATAAAATAA
Found at i:118600 original size:21 final size:21
Alignment explanation
Indices: 118575--118615 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
118565 AATAAAAGGA
118575 AAATATAATAGTAAAAATAAT
1 AAATATAATAGTAAAAATAAT
*
118596 AAATATAATAGTAATAATAA
1 AAATATAATAGTAAAAATAA
118616 AATGCAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (21 bp):
AAATATAATAGTAAAAATAAT
Found at i:119205 original size:37 final size:37
Alignment explanation
Indices: 119164--119268 Score: 156
Period size: 37 Copynumber: 2.8 Consensus size: 37
119154 GTGCTTATGG
*
119164 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTAAATCATAGTAGAACTCT
* * *
119201 ATCCTATTTTTAGGAGTTTAAATCATAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAATCATAGTAGAACTCT
* *
119238 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTAAATCATAGTAG
119269 GACGAAAAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATCATAGTAGAACTCT
Found at i:120324 original size:106 final size:106
Alignment explanation
Indices: 119998--120389 Score: 419
Period size: 106 Copynumber: 3.8 Consensus size: 106
119988 AGCATTGTTC
* * *
119998 TGAGTCCAATATCC-TC-CGTCGTGAAGTTAAAATTGGCTCTGGAACTGGGAAATTGTTTGTTGA
1 TGAGTCCAATATCCTTCAC-T-GTGAAGTTAAAATTGGCTCTGAAATTGGGAAATTGTTTATTGA
* * *
120061 CAACCAGTC-GTCCCTTCGTTGTGAAGTTGAACTTGTATTATCT
64 CAACCAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* * * * **
120104 CGAGTCTAATATCCTTTGA-TGTGAAGTTGAAATTGAATCTG-AA-T--GAAA-T-TTTATTGAC
1 TGAGTCCAATATCC-TTCACTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAATTGTTTATTGAC
* * * * *
120162 AATCAGCCG-CCTCTTCGTCGTGAATTTGAGCTTGTGTTGCCT
65 AACCAGCGGTCC-CTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* * * * * *
120204 TGGGTTCAAGATCCTTCACTGAGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACA
1 TGAGTCCAATATCCTTCACTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
*
120269 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
* **
120310 TGAGTCCAATATCCTACGTTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
1 TGAGTCCAATATCCTTCACTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
120375 ACCAGCGGTCCCTTC
66 ACCAGCGGTCCCTTC
120390 ATTGTCTGGA
Statistics
Matches: 234, Mismatches: 39, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
99 6 0.03
100 66 0.28
101 3 0.01
102 5 0.02
104 4 0.02
105 3 0.01
106 143 0.61
107 3 0.01
108 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (106 bp):
TGAGTCCAATATCCTTCACTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
Found at i:120610 original size:106 final size:106
Alignment explanation
Indices: 120418--120958 Score: 920
Period size: 106 Copynumber: 5.1 Consensus size: 106
120408 ATTGTTTATT
* *
120418 GTGAAGTTGGACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAA
1 GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
120483 AATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTC
66 AATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTC
* *
120524 GTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGA
1 GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
* * * *
120589 AATTGGGAAGTTATTTATTGACAACCAGTGGTCCCTTCGTC
66 AATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTC
* * * *
120630 GTGAAGTTGAACTTGCATTGTCTTGAGTCCAATATTCTTCGCTGTGAAGTTGAAATTGGCTCTGA
1 GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
* *
120695 AATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTC
66 AATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTC
* *
120736 GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTCTAA
1 GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
120801 AATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTC
66 AATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTC
*
120842 GTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
1 GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
*
120907 AATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTT
66 AATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTC
120948 GTGAAGTTGAA
1 GTGAAGTTGAA
120959 ATTGGCTCTG
Statistics
Matches: 407, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 407 1.00
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.34
Consensus pattern (106 bp):
GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
AATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTC
Found at i:120963 original size:169 final size:169
Alignment explanation
Indices: 120771--121127 Score: 635
Period size: 169 Copynumber: 2.1 Consensus size: 169
120761 AGTCCAATAT
* *
120771 CCTTCGTTGTGAAGTTAAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCC
*
120836 TTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
66 TTCGTCATGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
*
120901 CTCTGAAATTGAGAAGTTGTTTGTTGACAACCAG-CGGTC
131 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGTC-GTC
* *
120940 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCC
*
121005 TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
66 TTCGTCATGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
121070 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGTCGTC
131 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGTCGTC
121109 CCTTCGTTGTGAAGTTGAA
1 CCTTCGTTGTGAAGTTGAA
121128 CTTGTATTAT
Statistics
Matches: 180, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
169 179 0.99
170 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (169 bp):
CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCC
TTCGTCATGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGTCGTC
Found at i:120980 original size:63 final size:63
Alignment explanation
Indices: 120877--121021 Score: 254
Period size: 63 Copynumber: 2.3 Consensus size: 63
120867 AGTCCAATAT
*
120877 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTC
*
120940 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTC
**
121003 CCTTCGTCATGAAGTTGAA
1 CCTTCGTTGTGAAGTTGAA
121022 CTTGCGTTGT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 78 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (63 bp):
CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTC
Found at i:120993 original size:275 final size:275
Alignment explanation
Indices: 120666--121182 Score: 874
Period size: 275 Copynumber: 1.9 Consensus size: 275
120656 GTCCAATATT
*
120666 CTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCT
1 CTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCT
*
120731 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGC
66 TCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGC
*
120796 TCTAAAATTGAGAAGTTGTTTGTTGACAACCAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCAT
131 TCTAAAATTGAGAAGTTGTTTATTGACAACCAGTC-GTCCCTTCGTCGTGAAGTTGAACTTGCAT
* * * * *
120860 TGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGT
195 TATCTCGAGTCCAATATCCTTCGCTATGAAGTTGAAATTGACTCTGAAATTGAGAAGTTGTTTGT
120925 TGACAACCAGCGGTCC
260 TGACAACCAGCGGTCC
* *
120941 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
1 CTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCT
*
121006 TCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGC
66 TCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGC
* * *
121071 TCTGAAATTGAGAAGTTGTTTATTGACAACCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTATT
131 TCTAAAATTGAGAAGTTGTTTATTGACAACCAGTCGTCCCTTCGTCGTGAAGTTGAACTTGCATT
* *
121136 ATCTCGAGTCTAATATCCTTTGCTATGAAGTTGAAATTGACTCTGAA
196 ATCTCGAGTCCAATATCCTTCGCTATGAAGTTGAAATTGACTCTGAA
121183 TGAAATTTTG
Statistics
Matches: 225, Mismatches: 16, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
275 224 1.00
276 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (275 bp):
CTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCT
TCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGC
TCTAAAATTGAGAAGTTGTTTATTGACAACCAGTCGTCCCTTCGTCGTGAAGTTGAACTTGCATT
ATCTCGAGTCCAATATCCTTCGCTATGAAGTTGAAATTGACTCTGAAATTGAGAAGTTGTTTGTT
GACAACCAGCGGTCC
Found at i:121050 original size:106 final size:106
Alignment explanation
Indices: 120940--121969 Score: 1484
Period size: 106 Copynumber: 9.8 Consensus size: 106
120930 ACCAGCGGTC
120940 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
*
121005 TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
*
121046 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGTC-GTCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAG-CGGTCC
* ** * * *
121110 CTTCGTTGTGAAGTTGAACTTGTATTATCTCGAGTCTAATAT
65 CTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * * * * * * *
121152 CCTTTGCTATGAAGTTGAAATTGACTCTG-AA-T--GAA-AT-TTTGTTGACAATCAGCCG-CCT
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCC-
* * * * * *
121210 CTTCGTCGTGAATTTGAGCTTGTGTTGCCTTGG-GTTCAAGAT
65 CTTCGTCGTGAAGTTGAACTTGCGTTGTC-TGGAGTCCAATAT
* * * * *
121252 CCTTCGCTGAGAATTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCACCGATCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
*
121317 TTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * *
121358 CCTACGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTATTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
*
121423 TTCATCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * * *
121464 CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTATTTGTTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
* *
121529 TTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCTAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
*
121570 CCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
* * *
121635 TTCGTCGTGAAGTTGAACTTACGTTATCTTGAGTCCAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * *
121676 TCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
*
121741 TTCGTCGTGAAGTTGAACTTGCGTTGTTTGGAGTCCAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * * *
121782 CCTTCGTTGTGAAGTTAAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
121847 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * *
121888 CCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
*
121953 TTCGTTGTGAAGTTGAA
66 TTCGTCGTGAAGTTGAA
121970 ATTGGCTCTG
Statistics
Matches: 825, Mismatches: 87, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
99 3 0.00
100 67 0.08
101 5 0.01
102 4 0.00
104 4 0.00
105 5 0.01
106 734 0.89
107 3 0.00
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (106 bp):
CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
Found at i:121967 original size:63 final size:63
Alignment explanation
Indices: 121888--122032 Score: 245
Period size: 63 Copynumber: 2.3 Consensus size: 63
121878 AGTCCAATAT
* *
121888 CCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTC
*
121951 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTC
**
122014 CCTTCGTCATGAAGTTGAA
1 CCTTCGTTGTGAAGTTGAA
122033 CTTGCGTTGT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 77 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (63 bp):
CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTC
Found at i:121974 original size:169 final size:169
Alignment explanation
Indices: 121782--122138 Score: 624
Period size: 169 Copynumber: 2.1 Consensus size: 169
121772 AGTCCAATAT
* *
121782 CCTTCGTTGTGAAGTTAAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCC
* *
121847 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGG
66 TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCATTGTGAAGATGAAATTGG
*
121912 CTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTC
131 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTC
* *
121951 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCC
*
122016 TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGATGAAATTGG
66 TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCATTGTGAAGATGAAATTGG
*
122081 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGTGGTC
131 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTC
*
122120 CCTTCGTCGTGAAGTTGAA
1 CCTTCGTTGTGAAGTTGAA
122139 CTTGCGTTGT
Statistics
Matches: 178, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
169 178 1.00
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (169 bp):
CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCC
TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCATTGTGAAGATGAAATTGG
CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTC
Found at i:121986 original size:275 final size:275
Alignment explanation
Indices: 121677--122244 Score: 994
Period size: 275 Copynumber: 2.1 Consensus size: 275
121667 GTCCAATATT
* *
121677 CTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCT
1 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
* * *
121742 TCGTCGTGAAGTTGAACTTGCGTTGTTTGGAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGC
66 TCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGATAAAATTGGC
*
121807 TCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTT
131 TCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTT
* *
121872 GTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATT-GAGAAGTTGTTTGT
196 GTCTGGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGA-AAGTTGTTTAT
121936 TGACAACCAGCGGTCC
260 TGACAACCAGCGGTCC
121952 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
1 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
*
122017 TCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGATGAAATTGGC
66 TCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGATAAAATTGGC
* *
122082 TCTGAAATTGAGAAGTTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTT
131 TCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTT
*
122147 GTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTATT
196 GTCTGGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTATT
*
122212 GACAACCAGCGGTTC
261 GACAACCAGCGGTCC
*
122227 CTTCGTCGTGAAGTTGAA
1 CTTCGTTGTGAAGTTGAA
122245 CTTGTGTTGT
Statistics
Matches: 278, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
275 276 0.99
276 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (275 bp):
CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
TCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGATAAAATTGGC
TCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTT
GTCTGGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTATT
GACAACCAGCGGTCC
Found at i:122061 original size:106 final size:106
Alignment explanation
Indices: 121951--122472 Score: 830
Period size: 106 Copynumber: 4.9 Consensus size: 106
121941 ACCAGCGGTC
121951 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
*
122016 TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * *
122057 CCTTCGTTGTGAAGATGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGTGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
122122 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * *
122163 CCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTATTGACAACCAGCGGTTCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
* *
122228 TTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCTAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * * * * *
122269 CCTTCGTTGTGAAGTTGAAATTAGATATGAAATTGGGAAATTGTTTATTGACAATCAGCAGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
122334 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * * * *
122375 CCTTCGTTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATTG-TTGTTGACAACCAGCCGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
* * *
122439 TTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGT
66 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
122473 GGCACGATAT
Statistics
Matches: 382, Mismatches: 34, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
105 49 0.13
106 333 0.87
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (106 bp):
CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
Found at i:122070 original size:381 final size:381
Alignment explanation
Indices: 121570--122350 Score: 1285
Period size: 381 Copynumber: 2.0 Consensus size: 381
121560 AGTCTAATAT
*
121570 CCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
* * * *
121635 TTCGTCGTGAAGTTGAACTTACGTTATCTTGAGTCCAATATTCTTCGCTGTGAAGTTGAAATTGG
66 TTCGTCATGAAGTTGAACTTACGTTATCTGGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGG
* *
121700 CTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
131 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
* * *
121765 TGTTTGGAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTCTAAAATT-GAGAAGTTGTTTG
196 TGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTAAAATTGGA-AAGTTGTTTA
121829 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCA
260 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCA
* * * * * *
121894 TTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTC
325 TTGTGAAGTTGAAATTAGATATGAAATTGAGAAATTGTTTATTGACAACCAGCAGTC
121951 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
* * *
122016 TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGATGAAATTGG
66 TTCGTCATGAAGTTGAACTTACGTTATCTGGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGG
*
122081 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
131 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
* *
122146 TGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTAT
196 TGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTAAAATTGGAAAGTTGTTTAT
* * * *
122211 TGACAACCAGCGGTTCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCTAATATCCTTCGT
261 TGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCAT
* *
122276 TGTGAAGTTGAAATTAGATATGAAATTGGGAAATTGTTTATTGACAATCAGCAGTC
326 TGTGAAGTTGAAATTAGATATGAAATTGAGAAATTGTTTATTGACAACCAGCAGTC
*
122332 CCTTCGTCGTGAAGTTGAA
1 CCTTCGTTGTGAAGTTGAA
122351 CTTGCGTTGT
Statistics
Matches: 370, Mismatches: 29, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
381 368 0.99
382 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (381 bp):
CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
TTCGTCATGAAGTTGAACTTACGTTATCTGGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGG
CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
TGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTAAAATTGGAAAGTTGTTTAT
TGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCAT
TGTGAAGTTGAAATTAGATATGAAATTGAGAAATTGTTTATTGACAACCAGCAGTC
Found at i:122279 original size:487 final size:486
Alignment explanation
Indices: 121464--122455 Score: 1644
Period size: 487 Copynumber: 2.0 Consensus size: 486
121454 AGTCCAATAT
*
121464 CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTATTTGTTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTATTTATTGACAACCAGCGGTCCC
* * * *
121529 TTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCTAATATCCTTCGCTGTGAAGTTGAAATTGG
66 TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGG
*
121594 CTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGT
131 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGT
* * * *
121659 TATCTTGAGTCCAATATTCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGT
196 TATCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTAT
*
121724 TGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTTTGGAGTCCAATATCCTTCGT
261 TGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGT
* * * * * *
121789 TGTGAAGTTAAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCG
326 TGTGAAGTTAAAATTAGATATAAAATTGAGAAATTGTTTATTGACAACCAGCAGTCCCTTCGTCG
*
121854 TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAA
391 TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCCGAA
* *
121919 ATT-GAGAAGTTGTTTGTTGACAACCAGCGGTC
456 ATTGGA-AAATTG-TTGTTGACAACCAGCCGTC
* * *
121951 CCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCC
1 CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTATTTATTGACAACCAGCGGTCCC
*
122016 TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGATGAAATTGG
66 TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGG
* *
122081 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
131 CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGT
*
122146 TGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTAT
196 TATCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTAT
* * *
122211 TGACAACCAGCGGTTCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCTAATATCCTTCGT
261 TGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGT
* * * *
122276 TGTGAAGTTGAAATTAGATATGAAATTGGGAAATTGTTTATTGACAATCAGCAGTCCCTTCGTCG
326 TGTGAAGTTAAAATTAGATATAAAATTGAGAAATTGTTTATTGACAACCAGCAGTCCCTTCGTCG
*
122341 TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCCGAA
391 TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCCGAA
122406 ATTGGAAAATTGTTGTTGACAACCAGCCGTC
456 ATTGGAAAATTGTTGTTGACAACCAGCCGTC
122437 CCTTCGTTGTGAAGTTGAA
1 CCTTCGTTGTGAAGTTGAA
122456 CTTGTGTTGT
Statistics
Matches: 469, Mismatches: 35, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
486 37 0.08
487 430 0.92
488 2 0.00
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (486 bp):
CCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTATTTATTGACAACCAGCGGTCCC
TTCGTCATGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGG
CTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGT
TATCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTAT
TGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGT
TGTGAAGTTAAAATTAGATATAAAATTGAGAAATTGTTTATTGACAACCAGCAGTCCCTTCGTCG
TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCCGAA
ATTGGAAAATTGTTGTTGACAACCAGCCGTC
Found at i:123323 original size:22 final size:22
Alignment explanation
Indices: 123298--123374 Score: 118
Period size: 22 Copynumber: 3.5 Consensus size: 22
123288 TTATGTTTGG
*
123298 TCAAAGGTTTAGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
123320 TCAAAGGTTTGGCATGTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
123342 TCATAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
123364 TCAACGGTTTG
1 TCAAAGGTTTG
123375 ATGGGGTAGC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.36
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:124004 original size:12 final size:12
Alignment explanation
Indices: 123989--124038 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
123979 TTCTTTTTGA
123989 TTTTTGTTC-TT
1 TTTTTGTTCTTT
124000 TTTTT-TTCTTCT
1 TTTTTGTTCTT-T
124012 TTTTTGCTTCTTT
1 TTTTTG-TTCTTT
* *
124025 TCTTTCTTCTTT
1 TTTTTGTTCTTT
124037 TT
1 TT
124039 GCCCTTTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
10 3 0.09
11 6 0.19
12 13 0.41
13 5 0.16
14 5 0.16
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.80
Consensus pattern (12 bp):
TTTTTGTTCTTT
Found at i:124005 original size:13 final size:13
Alignment explanation
Indices: 123976--124038 Score: 53
Period size: 13 Copynumber: 5.1 Consensus size: 13
123966 TTTTTGTCCC
*
123976 TTTTTCTT-TTTGA
1 TTTTTCTTCTTT-T
*
123989 TTTTTGTTCTTTT
1 TTTTTCTTCTTTT
124002 TTTTTCTTC--TT
1 TTTTTCTTCTTTT
*
124013 TTTTGCTTC-TTT
1 TTTTTCTTCTTTT
*
124025 TCTTTCTTCTTTT
1 TTTTTCTTCTTTT
124038 T
1 T
124039 GCCCTTTTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
11 10 0.24
12 9 0.22
13 19 0.46
14 3 0.07
ACGTcount: A:0.02, C:0.14, G:0.05, T:0.79
Consensus pattern (13 bp):
TTTTTCTTCTTTT
Found at i:124047 original size:22 final size:22
Alignment explanation
Indices: 123966--124047 Score: 69
Period size: 23 Copynumber: 3.6 Consensus size: 22
123956 TGCATGTGCT
*
123966 TTTTTGTCCCTTTTTCTTT-TTGA
1 TTTTTG-CCCTTTTTCTTTCTT-C
** *
123989 TTTTTGTTCTTTTTTTTTCTTC
1 TTTTTGCCCTTTTTCTTTCTTC
*
124011 TTTTTTG-CTTCTTTTCTTTCTTC
1 -TTTTTGCCCT-TTTTCTTTCTTC
124034 TTTTTGCCCTTTTT
1 TTTTTGCCCTTTTT
124048 GTTCTGATTG
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
22 20 0.43
23 27 0.57
ACGTcount: A:0.01, C:0.18, G:0.06, T:0.74
Consensus pattern (22 bp):
TTTTTGCCCTTTTTCTTTCTTC
Found at i:127408 original size:40 final size:38
Alignment explanation
Indices: 127352--127426 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 38
127342 TTAATTAAAT
*
127352 TAAAATGAAAAGAAAAGA-AAACAAATTAAGTAAAATGA
1 TAAAATGAAAAGAAAAGATAAA-AAAGTAAGTAAAATGA
*
127390 TAAAATGAAGAAAGAAAAGATAAAATAGTAAGTAAAA
1 TAAAATG-A-AAAGAAAAGATAAAAAAGTAAGTAAAA
127427 AAAACAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
38 7 0.22
39 1 0.03
40 21 0.66
41 3 0.09
ACGTcount: A:0.68, C:0.01, G:0.15, T:0.16
Consensus pattern (38 bp):
TAAAATGAAAAGAAAAGATAAAAAAGTAAGTAAAATGA
Found at i:127466 original size:24 final size:23
Alignment explanation
Indices: 127425--127483 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
127415 TAGTAAGTAA
*
127425 AAAAAACAAATAATAAAATATATAT
1 AAAAAACAAATAAGAAAATA-A-AT
*
127450 AAAAAAGAAA-AAGAAAATAAAT
1 AAAAAACAAATAAGAAAATAAAT
*
127472 AAAACA-AAATAA
1 AAAAAACAAATAA
127484 TAATAACAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 9 0.30
23 1 0.03
24 8 0.27
25 9 0.30
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.15
Consensus pattern (23 bp):
AAAAAACAAATAAGAAAATAAAT
Found at i:127510 original size:2 final size:2
Alignment explanation
Indices: 127503--127561 Score: 95
Period size: 2 Copynumber: 30.5 Consensus size: 2
127493 AATCCGAATA
*
127503 AT AT AT AT AT AT AT AT A- AT AA AT A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
127543 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
127562 ATTAATAAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
1 2 0.04
2 51 0.96
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:127532 original size:14 final size:14
Alignment explanation
Indices: 127513--127569 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
127503 ATATATATAT
127513 ATATATAATAAATA
1 ATATATAATAAATA
*
127527 ATATAT-ATATAT-
1 ATATATAATAAATA
*
127539 ATATATATATATATA
1 ATATATA-ATAAATA
*
127554 TATATATAATTAATA
1 -ATATATAATAAATA
127569 A
1 A
127570 ATTAAATGAC
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
12 6 0.17
13 5 0.14
14 13 0.36
15 5 0.14
16 7 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATATATAATAAATA
Found at i:128013 original size:2 final size:2
Alignment explanation
Indices: 128006--128064 Score: 100
Period size: 2 Copynumber: 29.5 Consensus size: 2
127996 GAACATACGC
**
128006 AT AT AT AT AT AT AT AT AT GC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128048 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
128065 ACAAAATAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:128097 original size:12 final size:11
Alignment explanation
Indices: 128073--128116 Score: 58
Period size: 12 Copynumber: 4.2 Consensus size: 11
128063 TAACAAAATA
128073 AATAATA-AA-
1 AATAATACAAG
128082 AATAATACAAG
1 AATAATACAAG
128093 TAATAATACAAG
1 -AATAATACAAG
128105 AATAATA-AAG
1 AATAATACAAG
128115 AA
1 AA
128117 AGAGAAAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 7 0.22
10 7 0.22
11 7 0.22
12 11 0.34
ACGTcount: A:0.68, C:0.05, G:0.07, T:0.20
Consensus pattern (11 bp):
AATAATACAAG
Found at i:128152 original size:19 final size:19
Alignment explanation
Indices: 128128--128218 Score: 64
Period size: 19 Copynumber: 4.8 Consensus size: 19
128118 GAGAAAGTAA
128128 AAAATATAATAATAATAAT
1 AAAATATAATAATAATAAT
*
128147 AAAATATAAAAAT-ATACAT
1 AAAATATAATAATAATA-AT
* *
128166 ATAATATAAATAAGT-AGAAT
1 AAAATAT-AATAA-TAATAAT
* * *
128186 AAAAGGAAAAT-ATAATAGT
1 AAAA-TATAATAATAATAAT
128205 AAAA-ATAATAATAA
1 AAAATATAATAATAA
128219 ATATAATAGT
Statistics
Matches: 56, Mismatches: 10, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
17 4 0.07
18 8 0.14
19 28 0.50
20 12 0.21
21 4 0.07
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.26
Consensus pattern (19 bp):
AAAATATAATAATAATAAT
Found at i:128214 original size:12 final size:12
Alignment explanation
Indices: 128192--128230 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
128182 GAATAAAAGG
128192 AAAATATAATAGT
1 AAAA-ATAATAGT
*
128205 AAAAATAATAAT
1 AAAAATAATAGT
*
128217 AAATATAATAGT
1 AAAAATAATAGT
128229 AA
1 AA
128231 TAGTAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 19 0.83
13 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (12 bp):
AAAAATAATAGT
Found at i:128220 original size:24 final size:24
Alignment explanation
Indices: 128135--128230 Score: 76
Period size: 24 Copynumber: 4.0 Consensus size: 24
128125 TAAAAAATAT
*
128135 AATAATAAT-AATAAAATA-TAAA
1 AATAATAATAAATATAATAGTAAA
*
128157 AAT-ATACATATAATATAAATAAGT-AG
1 AATAATA-ATA-AATAT-AAT-AGTAAA
*
128183 AATAA-AAGGAAAATATAATAGTAAA
1 AATAATAA--TAAATATAATAGTAAA
128208 AATAATAATAAATATAATAGTAA
1 AATAATAATAAATATAATAGTAA
128231 TAGTAAAAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
21 3 0.05
22 5 0.09
24 21 0.36
25 13 0.22
26 13 0.22
27 3 0.05
ACGTcount: A:0.66, C:0.01, G:0.06, T:0.27
Consensus pattern (24 bp):
AATAATAATAAATATAATAGTAAA
Found at i:128810 original size:37 final size:37
Alignment explanation
Indices: 128769--128873 Score: 156
Period size: 37 Copynumber: 2.8 Consensus size: 37
128759 GTGTTTGTGG
* *
128769 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAGAACTCT
* * *
128806 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAGAACTCT
*
128843 ATCATATTTTTAGGAGTTTAAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAG
128874 GACGAAAAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATCCTAGTAGAACTCT
Found at i:129517 original size:25 final size:23
Alignment explanation
Indices: 129480--129525 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 23
129470 GCTATATTTG
129480 TTTTAAATAAAT-ACAACTAAACT
1 TTTTAAATAAATAACAA-TAAACT
129503 TTTTATAATCAAATAACAATAAA
1 TTTTA-AAT-AAATAACAATAAA
129526 AATGCATCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 5 0.25
24 3 0.15
25 8 0.40
26 4 0.20
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (23 bp):
TTTTAAATAAATAACAATAAACT
Found at i:131324 original size:8 final size:8
Alignment explanation
Indices: 131311--131335 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
131301 TGAGTTCATT
131311 CTTTCTAG
1 CTTTCTAG
131319 CTTTCTAG
1 CTTTCTAG
131327 CTTTCTAG
1 CTTTCTAG
131335 C
1 C
131336 CTTGACGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.28, G:0.12, T:0.48
Consensus pattern (8 bp):
CTTTCTAG
Found at i:133227 original size:2 final size:2
Alignment explanation
Indices: 133220--133309 Score: 61
Period size: 2 Copynumber: 49.0 Consensus size: 2
133210 TCGGGCCATG
* * * *
133220 TA TA TA TA TA TA TT TA AA T- TA AA TA TA TA AA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
133260 TA TA TA TA TA TA TA TT TA AA T- TA -A AA T- TA T- TA -A TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
133296 TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
133310 ATAATTATTT
Statistics
Matches: 67, Mismatches: 13, Indels: 16
0.70 0.14 0.17
Matches are distributed among these distances:
1 8 0.12
2 59 0.88
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:133274 original size:42 final size:42
Alignment explanation
Indices: 133220--133309 Score: 155
Period size: 42 Copynumber: 2.1 Consensus size: 42
133210 TCGGGCCATG
133220 TATATATATATATTTAAATT-AAATATATAAATATTATATATA
1 TATATATATATATTTAAATTAAAAT-TATAAATATTATATATA
*
133262 TATATATATATATTTAAATTAAAATTATTAATATTATATATA
1 TATATATATATATTTAAATTAAAATTATAAATATTATATATA
133304 TATATA
1 TATATA
133310 ATAATTATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 42 0.91
43 4 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (42 bp):
TATATATATATATTTAAATTAAAATTATAAATATTATATATA
Found at i:137911 original size:29 final size:29
Alignment explanation
Indices: 137869--137927 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
137859 AGATTGAAAC
137869 TTAAGGGCACGAGCTACATTAAGCATATG
1 TTAAGGGCACGAGCTACATTAAGCATATG
137898 TTAAGGGCACGAGCTACATTAAGCATATG
1 TTAAGGGCACGAGCTACATTAAGCATATG
137927 T
1 T
137928 CGATGCTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (29 bp):
TTAAGGGCACGAGCTACATTAAGCATATG
Found at i:139741 original size:21 final size:22
Alignment explanation
Indices: 139716--139757 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
139706 AAAATTTTAA
* *
139716 ACGATTT-TTGTAATATTAAAT
1 ACGATTTATAGTAATAATAAAT
139737 ACGATTTATAGTAATAATAAA
1 ACGATTTATAGTAATAATAAA
139758 ATAAATGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (22 bp):
ACGATTTATAGTAATAATAAAT
Found at i:155022 original size:21 final size:21
Alignment explanation
Indices: 154997--155071 Score: 57
Period size: 21 Copynumber: 3.4 Consensus size: 21
154987 GACATGAGAG
154997 GGGATTGAAAATGGGGAATTA
1 GGGATTGAAAATGGGGAATTA
*
155018 GGGATT-AAAGATACGACAGGAGA--A
1 GGGATTGAAA-AT--G--GGGA-ATTA
*
155042 GGGATTGAAAATAGGGAATTA
1 GGGATTGAAAATGGGGAATTA
155063 GGGATTGAA
1 GGGATTGAA
155072 GATCGAGAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
19 1 0.02
20 6 0.14
21 18 0.43
23 1 0.02
24 9 0.21
25 6 0.14
26 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.36, T:0.20
Consensus pattern (21 bp):
GGGATTGAAAATGGGGAATTA
Found at i:155033 original size:45 final size:45
Alignment explanation
Indices: 154984--155074 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
154974 GGTTAGGGAT
* * *
154984 TACGACATGAGAGGGGATTGAAAATGGGGAATTAGGGATTAAAGA
1 TACGACAGGAGAAGGGATTGAAAATAGGGAATTAGGGATTAAAGA
*
155029 TACGACAGGAGAAGGGATTGAAAATAGGGAATTAGGGATTGAAGA
1 TACGACAGGAGAAGGGATTGAAAATAGGGAATTAGGGATTAAAGA
155074 T
1 T
155075 CGAGAAGGGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.41, C:0.04, G:0.35, T:0.20
Consensus pattern (45 bp):
TACGACAGGAGAAGGGATTGAAAATAGGGAATTAGGGATTAAAGA
Found at i:157668 original size:35 final size:35
Alignment explanation
Indices: 157611--157683 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
157601 TCAAGTGGAT
* *
157611 CAATCTCCAAATGCTTCGAATGGCAATGACTAGAA
1 CAATCTCCAAATACTTCAAATGGCAATGACTAGAA
*
157646 CAATCTCCAGATACTTCAAATGGCAATGACTAGAA
1 CAATCTCCAAATACTTCAAATGGCAATGACTAGAA
157681 CAA
1 CAA
157684 GGGCGACGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.22
Consensus pattern (35 bp):
CAATCTCCAAATACTTCAAATGGCAATGACTAGAA
Found at i:158781 original size:112 final size:113
Alignment explanation
Indices: 158577--158811 Score: 429
Period size: 112 Copynumber: 2.1 Consensus size: 113
158567 TTACTTTGAC
*
158577 AAAATAAATTTATTTTATGTTTTTTATATTGGATAAATTTCAAAATATTTTTTTAAAATATTAAA
1 AAAATAAATTCATTTTATGTTTTTTATATTGGATAAATTTCAAAATATTTTTTTAAAATATTAAA
*
158642 AAATAATAATTTTGAAACAAATAAAAATGATTACTTTTTTTATGTAAT
66 AAATAATAATTTTGAAACAAATAAAAATGATTACTTTTTTTATCTAAT
158690 AAAATAAATTCATTTTATGTTTTTTTATATTGGATAAATTTCAAAATA-TTTTTTAAAATATT-A
1 AAAATAAATTCATTTTATG-TTTTTTATATTGGATAAATTTCAAAATATTTTTTTAAAATATTAA
158753 AAAATAATAATTTTGAAACAAATAAAAATGATTACTTTTTTTATCTAAT
65 AAAATAATAATTTTGAAACAAATAAAAATGATTACTTTTTTTATCTAAT
158802 AAAATAAATT
1 AAAATAAATT
158812 AGTGTTATTA
Statistics
Matches: 119, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
112 59 0.50
113 32 0.27
114 28 0.24
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (113 bp):
AAAATAAATTCATTTTATGTTTTTTATATTGGATAAATTTCAAAATATTTTTTTAAAATATTAAA
AAATAATAATTTTGAAACAAATAAAAATGATTACTTTTTTTATCTAAT
Found at i:165325 original size:30 final size:31
Alignment explanation
Indices: 165289--165363 Score: 80
Period size: 36 Copynumber: 2.3 Consensus size: 31
165279 CCAAAACCAG
* *
165289 ATGTGGCT-AAGAGTAGAGTGGAGTTTGCTA
1 ATGTGGCTCAAGAGTAGAGAGGAGGTTGCTA
165319 ATGTGGCTGCGGCCAAGAGTAGAGAGGAGGTTGCTA
1 ATGTGGCT-----CAAGAGTAGAGAGGAGGTTGCTA
165355 ATGTGGCTC
1 ATGTGGCTC
165364 CCATTGTTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
30 8 0.22
31 1 0.03
36 28 0.76
ACGTcount: A:0.24, C:0.12, G:0.39, T:0.25
Consensus pattern (31 bp):
ATGTGGCTCAAGAGTAGAGAGGAGGTTGCTA
Found at i:180825 original size:111 final size:111
Alignment explanation
Indices: 180631--180849 Score: 343
Period size: 111 Copynumber: 2.0 Consensus size: 111
180621 TCCCGAATCT
*
180631 GCATAGCTGATGGATCCTTTTACTGGTGGATGGAATTGGAAGAGTAAAATTAGCAGAAAATTTCT
1 GCATAGCTGATGGATCCTTTCACTGGTGGATGGAATTGGAAGAGTAAAATTAGCAGAAAATTTCT
180696 CCACTGATAAAGTCCTACAAGTCCCAAAATTATCCTATAATTTTCC
66 CCACTGATAAAGTCCTACAAGTCCCAAAATTATCCTATAATTTTCC
* *
180742 GCATAGCTGATGGAT-CTTACTCACTGGT-GATGGAATTGGAAGAGTTAAATTAGTAGAAAATTT
1 GCATAGCTGATGGATCCTT--TCACTGGTGGATGGAATTGGAAGAGTAAAATTAGCAGAAAATTT
** * *
180805 CTCCTTTGATAAAGTCCTACATGTCCCAAAATTGTCCTATAATTT
64 CTCCACTGATAAAGTCCTACAAGTCCCAAAATTATCCTATAATTT
180850 ACTTTCAATC
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
110 3 0.03
111 89 0.90
112 7 0.07
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (111 bp):
GCATAGCTGATGGATCCTTTCACTGGTGGATGGAATTGGAAGAGTAAAATTAGCAGAAAATTTCT
CCACTGATAAAGTCCTACAAGTCCCAAAATTATCCTATAATTTTCC
Found at i:190823 original size:25 final size:26
Alignment explanation
Indices: 190790--190845 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
190780 GTTATAAATT
*
190790 TATTTTTTATTTTATAATTT-AATCA-
1 TATTGTTTA-TTTATAATTTGAATCAG
*
190815 TATTGTTTATTTATTATTTGAATCAG
1 TATTGTTTATTTATAATTTGAATCAG
190841 TATTG
1 TATTG
190846 AAATTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 9 0.33
25 13 0.48
26 5 0.19
ACGTcount: A:0.29, C:0.04, G:0.07, T:0.61
Consensus pattern (26 bp):
TATTGTTTATTTATAATTTGAATCAG
Done.