Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003558.1 Hibiscus syriacus cultivar Beakdansim tig00007510_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56346

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1169--1212
20
2.3
20
85
11
58
27
2
9
61
1.38
3491--3524
16
2.1
16
88
0
50
50
8
5
35
1.58
12317--12343
14
1.9
14
100
0
54
66
11
0
22
1.22
14968--15016
25
2.0
25
92
4
82
40
16
22
20
1.91
17845--18094
54
4.6
54
87
5
360
30
16
21
31
1.95
17994--18078
27
3.1
27
66
24
79
29
16
22
31
1.96
18007--18092
27
3.2
27
68
23
81
32
16
22
29
1.95
22072--22125
22
2.5
22
87
0
81
27
29
25
16
1.97
24581--24799
97
2.3
97
82
6
266
41
19
10
28
1.84
28249--28307
29
2.0
29
100
0
118
23
13
13
49
1.78
32932--32990
29
2.0
29
100
0
118
23
13
13
49
1.78
41212--41277
24
2.7
24
90
2
96
31
21
19
27
1.97
41216--41282
25
2.7
25
84
6
84
32
23
19
23
1.97
41424--41496
15
4.9
15
81
0
83
39
20
5
34
1.76
41424--41505
30
2.7
30
80
0
83
39
21
4
34
1.75
41424--41505
15
5.5
15
80
0
74
39
21
4
34
1.75
48726--48783
2
29.0
2
100
0
116
50
0
0
50
1.00
49258--49378
22
5.5
22
96
0
215
26
25
20
27
1.99
49251--49402
22
6.9
22
91
1
126
27
25
20
26
1.99
49251--49405
66
2.3
66
86
2
213
27
24
20
27
1.99

Tables:   1

The End!