Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003559.1 Hibiscus syriacus cultivar Beakdansim tig00007512_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60357
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:1256 original size:23 final size:25
Alignment explanation
Indices: 1219--1266 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
1209 TTTAAAATTT
1219 TATATTATCAATAATGT-ATTTTAA
1 TATATTATCAATAATGTAATTTTAA
*
1243 TATATT-TTAATAATGTAATTTTAA
1 TATATTATCAATAATGTAATTTTAA
1267 AAAATCTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (25 bp):
TATATTATCAATAATGTAATTTTAA
Found at i:5616 original size:20 final size:20
Alignment explanation
Indices: 5591--5633 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
5581 TAAGTTGAGG
5591 ATTCCCGATGATGAAAGAAA
1 ATTCCCGATGATGAAAGAAA
5611 ATTCCCGATGATGAAAGAAA
1 ATTCCCGATGATGAAAGAAA
5631 ATT
1 ATT
5634 TTTACTGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (20 bp):
ATTCCCGATGATGAAAGAAA
Found at i:7865 original size:22 final size:20
Alignment explanation
Indices: 7820--7870 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 20
7810 TAAACTTAAC
7820 ATTTTTATTTTCCTTGACAA
1 ATTTTTATTTTCCTTGACAA
*
7840 ATTTATTAGTTTTCCTCTG-CAT
1 ATTT-TTA-TTTTCCT-TGACAA
7862 ATTTTTATT
1 ATTTTTATT
7871 GTCTCGGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 6 0.22
21 6 0.22
22 13 0.48
23 2 0.07
ACGTcount: A:0.22, C:0.14, G:0.06, T:0.59
Consensus pattern (20 bp):
ATTTTTATTTTCCTTGACAA
Found at i:16367 original size:42 final size:40
Alignment explanation
Indices: 16320--16408 Score: 117
Period size: 42 Copynumber: 2.2 Consensus size: 40
16310 TTAATGCATT
16320 TAGTATCGATATTGTTCATACAA-TACCAATACTATTCTTCA
1 TAGTATCGATATTGTTC-TACAAGTACCAATACTATTCTT-A
* * *
16361 TCAGTATCGATATTGTTCTTCAAGTATCGATACTATTCTTA
1 T-AGTATCGATATTGTTCTACAAGTACCAATACTATTCTTA
16402 TAGTATC
1 TAGTATC
16409 ATTAGGAGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
40 6 0.14
41 7 0.16
42 30 0.70
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (40 bp):
TAGTATCGATATTGTTCTACAAGTACCAATACTATTCTTA
Found at i:16388 original size:20 final size:20
Alignment explanation
Indices: 16321--16392 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
16311 TAATGCATTT
*
16321 AGTATCGATATTGTTCATACA
1 AGTATCGATATTGTTC-TTCA
* * * *
16342 A-TACCAATACTATTCTTCA
1 AGTATCGATATTGTTCTTCA
16361 TCAGTATCGATATTGTTCTTCA
1 --AGTATCGATATTGTTCTTCA
16383 AGTATCGATA
1 AGTATCGATA
16393 CTATTCTTAT
Statistics
Matches: 39, Mismatches: 9, Indels: 7
0.71 0.16 0.13
Matches are distributed among these distances:
19 3 0.08
20 20 0.51
21 2 0.05
22 14 0.36
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
AGTATCGATATTGTTCTTCA
Found at i:16399 original size:20 final size:21
Alignment explanation
Indices: 16348--16408 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 21
16338 TACAATACCA
16348 ATACTATTCTTCATCAGTATCG
1 ATACTATTCTTCA-CAGTATCG
* *
16370 ATATTGTTCTTCA-AGTATCG
1 ATACTATTCTTCACAGTATCG
*
16390 ATACTATTCTT-ATAGTATC
1 ATACTATTCTTCACAGTATC
16409 ATTAGGAGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 22 0.65
22 11 0.32
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (21 bp):
ATACTATTCTTCACAGTATCG
Found at i:16963 original size:18 final size:18
Alignment explanation
Indices: 16914--16964 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
16904 ATATTTTTAC
16914 ATATACATATTTATATAGAT
1 ATATA-ATA-TTATATAGAT
* *
16934 AGTATACT-TTATATATAT
1 A-TATAATATTATATAGAT
16952 ATATAATATTATA
1 ATATAATATTATA
16965 AGCTAGTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 5 0.19
18 15 0.58
20 2 0.08
21 4 0.15
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (18 bp):
ATATAATATTATATAGAT
Found at i:26748 original size:20 final size:21
Alignment explanation
Indices: 26723--26815 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
26713 TTTTCCCAAT
*
26723 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
26743 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
26764 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
26784 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
26805 TCGCAATGCGA
1 TCGCAATGCGA
26816 TACTTACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:26768 original size:41 final size:41
Alignment explanation
Indices: 26723--26815 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
26713 TTTTCCCAAT
26723 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
26764 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
26805 TCGCAATGCGA
1 TCGCAATGCGA
26816 TACTTACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:26828 original size:41 final size:41
Alignment explanation
Indices: 26742--26876 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 41
26732 GAATAAGTAA
** *
26742 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATAAGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTTACT
26783 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
* * ** * *
26824 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTTACT
*
26865 TTCGCAACGCGA
1 ATCGCAACGCGA
26877 TACTGACTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
40 5 0.06
41 74 0.91
42 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
Found at i:26829 original size:20 final size:20
Alignment explanation
Indices: 26804--26897 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
26794 AATTGGGAAA
*
26804 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTTACT
* * * **
26824 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-TACT
*
26845 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTTACT
* *
26865 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTTACT
*
26885 TTCGCAACGCGAT
1 ATCGCAACGCGAT
26898 TTACATAGCG
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 46 0.77
21 14 0.23
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTTACT
Found at i:27477 original size:19 final size:19
Alignment explanation
Indices: 27417--27497 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
27407 TTCGAGAATG
27417 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
** *
27437 ACTATCGCAA--CGAGAT-
1 AAAATCGCAACGCGAAATA
27453 --AATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
27470 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATA
27489 AAAATCGCA
1 AAAATCGCA
27498 TTGCGATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
14 7 0.14
16 5 0.10
17 4 0.08
18 1 0.02
19 24 0.49
20 8 0.16
ACGTcount: A:0.47, C:0.25, G:0.17, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:27515 original size:19 final size:19
Alignment explanation
Indices: 27493--27677 Score: 165
Period size: 19 Copynumber: 10.1 Consensus size: 19
27483 GAAACCAAAA
*
27493 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
27512 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
27531 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
27550 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
27570 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* * **
27586 T-G-GTCGTGATAGTCATT
1 TCGCGTTGCGATTTTCATT
27603 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
27617 TCTCGTTGCGATAATCATT
1 TCGCGTTGCGATTTTCATT
*
27636 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
27656 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
27676 TC
1 TC
27678 AACCAAAAGA
Statistics
Matches: 136, Mismatches: 17, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
14 19 0.14
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 59 0.43
20 49 0.36
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:27570 original size:39 final size:38
Alignment explanation
Indices: 27493--27677 Score: 165
Period size: 33 Copynumber: 5.1 Consensus size: 38
27483 GAAACCAAAA
*
27493 TCGCATTGCGATTTTCATTTCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
*
27531 TCGCGTTGCGATTTTTATTTCGCGGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGC-GTTGCGATTTTCATT
* * * **
27570 TCGCGTTGCGATTGTC---T-G-GTCGTGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* **
27603 TCGCGTTGCGA--TTC---TCTCGTTGCGATAATCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* *
27636 TCCGCGTTGCGATTCTCATTATCTCGTTGCGATTTTCATT
1 T-CGCGTTGCGATTTTCATT-TCGCGTTGCGATTTTCATT
27676 TC
1 TC
27678 AACCAAAAGA
Statistics
Matches: 121, Mismatches: 16, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
31 3 0.02
33 35 0.29
34 10 0.08
35 1 0.01
36 3 0.02
38 21 0.17
39 30 0.25
40 18 0.15
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
Found at i:27654 original size:20 final size:20
Alignment explanation
Indices: 27620--27677 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
27610 GCGATTCTCT
*
27620 CGTTGCGATAATCATTTCCG
1 CGTTGCGATTATCATTTCCG
* *
27640 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTATCATT-TCCG
*
27660 CGTTGCGATTTTCATTTC
1 CGTTGCGATTATCATTTC
27678 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.16, C:0.24, G:0.17, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTATCATTTCCG
Found at i:29739 original size:42 final size:42
Alignment explanation
Indices: 29678--29800 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 42
29668 GCCCGACTCG
* * * *
29678 CCTATTATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
29720 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
29762 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
29801 CCCGATTCAC
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
42 61 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.24
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:29758 original size:21 final size:21
Alignment explanation
Indices: 29734--29800 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
29724 TCATTCCTCG
29734 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
29755 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
29776 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
29797 AGAG
1 AGAG
29801 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:31179 original size:14 final size:14
Alignment explanation
Indices: 31160--31195 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
31150 ATTGTTTAAT
31160 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
31174 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
31188 TGATTTGT
1 TGATTTGT
31196 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:31397 original size:19 final size:19
Alignment explanation
Indices: 31375--31525 Score: 80
Period size: 19 Copynumber: 8.7 Consensus size: 19
31365 CGAAATTAAA
31375 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
31394 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
31409 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
31427 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
31441 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
31460 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
31475 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
31493 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
31512 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
31526 GGACATTAAG
Statistics
Matches: 95, Mismatches: 21, Indels: 31
0.65 0.14 0.21
Matches are distributed among these distances:
14 28 0.29
16 6 0.06
17 6 0.06
19 45 0.47
20 10 0.11
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:31421 original size:33 final size:32
Alignment explanation
Indices: 31379--31505 Score: 193
Period size: 33 Copynumber: 3.9 Consensus size: 32
31369 ATTAAATTCG
31379 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
**
31412 CGTTGCGATTTTCATTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
31445 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
31478 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
31506 AGTAATTTCC
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
31 3 0.03
33 80 0.93
35 3 0.03
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:31468 original size:66 final size:66
Alignment explanation
Indices: 31372--31504 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
31362 ACGCGAAATT
*
31372 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
31437 G
66 G
*
31438 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
31503 G
66 G
31504 A
1 A
31505 TAGTAATTTC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.41
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
G
Found at i:33811 original size:12 final size:12
Alignment explanation
Indices: 33794--33818 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33784 TCTTCGGGGA
33794 CTTTTTCTTCTT
1 CTTTTTCTTCTT
33806 CTTTTTCTTCTT
1 CTTTTTCTTCTT
33818 C
1 C
33819 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:34027 original size:24 final size:24
Alignment explanation
Indices: 33993--34046 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
33983 CTGAAACATC
* *
33993 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
34017 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
34041 ATCAAA
1 ATCAAA
34047 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:34981 original size:20 final size:20
Alignment explanation
Indices: 34956--35013 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
34946 ATTCATTTGA
34956 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
34976 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
34996 CTATCGCAACGAGAAAAT
1 CTATCGCAACGCGAAAAT
35014 CGCAATGCGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:35054 original size:19 final size:19
Alignment explanation
Indices: 35032--35152 Score: 189
Period size: 19 Copynumber: 6.6 Consensus size: 19
35022 GAAATGAAAA
35032 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
35051 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
35067 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
35084 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
35103 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
35122 TCGCATTGCGATTTCCATT
1 TCGCATTGCGATTTTCATT
*
35141 TCGCGTTGCGAT
1 TCGCATTGCGAT
35153 AGTCTGTTTT
Statistics
Matches: 95, Mismatches: 2, Indels: 10
0.89 0.02 0.09
Matches are distributed among these distances:
14 11 0.12
16 3 0.03
17 3 0.03
19 78 0.82
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.45
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:35079 original size:33 final size:35
Alignment explanation
Indices: 35036--35135 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 35
35026 TGAAAATCGC
35036 ATTGCGATTTTCATTTCGCATTGCGATTTTC-TCG
1 ATTGCGATTTTCATTTCGCATTGCGATTTTCTTCG
35070 -TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCG
1 ATTGCGATTTTCATTTCGCATTGCGATTTTC--TTCG
35106 CATTGCGATTTTCATTTCGCATTGCGATTT
1 -ATTGCGATTTTCATTTCGCATTGCGATTT
35136 CCATTTCGCG
Statistics
Matches: 61, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
33 30 0.49
36 3 0.05
38 28 0.46
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.48
Consensus pattern (35 bp):
ATTGCGATTTTCATTTCGCATTGCGATTTTCTTCG
Found at i:35088 original size:52 final size:54
Alignment explanation
Indices: 35032--35152 Score: 183
Period size: 52 Copynumber: 2.2 Consensus size: 54
35022 GAAATGAAAA
*
35032 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTC-TCG-TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCTTCGATTGCGATTTCCATT
35084 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTCCATT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTC--TTCG-ATTGCGATTTCCATT
*
35141 TCGCGTTGCGAT
1 TCGCATTGCGAT
35153 AGTCTGTTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
52 35 0.56
55 3 0.05
57 24 0.39
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.45
Consensus pattern (54 bp):
TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCTTCGATTGCGATTTCCATT
Found at i:37165 original size:20 final size:19
Alignment explanation
Indices: 37130--37196 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
37120 GAAACTTAAA
37130 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
37149 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
37169 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
37188 ATCGCAACG
1 ATCGCAACG
37197 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:37204 original size:14 final size:14
Alignment explanation
Indices: 37185--37242 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
37175 ATGCGAAATG
37185 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
37199 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
37215 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
37231 AAAATCGCAACG
1 AAAATCGCAACG
37243 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:37227 original size:32 final size:33
Alignment explanation
Indices: 37169--37247 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
37159 GGAAATGGCT
*
37169 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
37202 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
37234 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
37248 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:37276 original size:19 final size:17
Alignment explanation
Indices: 37254--37349 Score: 69
Period size: 14 Copynumber: 5.7 Consensus size: 17
37244 GAAACACAAA
37254 TCGCATTGCGATTTTAATT
1 TCGCATTGCGA-TTT-ATT
* *
37273 TCGCGTTGCGATTT-TG
1 TCGCATTGCGATTTATT
37289 T--CATTGCGATTTCATT
1 TCGCATTGCGATTT-ATT
* *
37305 TCGCGTTGCGATTT-TG
1 TCGCATTGCGATTTATT
37321 TCG--TTGCGATTTTCATT
1 TCGCATTGCGA-TTT-ATT
37338 TCGCATTGCGAT
1 TCGCATTGCGAT
37350 AGCCATTTCC
Statistics
Matches: 61, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
14 16 0.26
15 3 0.05
16 8 0.13
17 4 0.07
18 14 0.23
19 16 0.26
ACGTcount: A:0.14, C:0.19, G:0.22, T:0.46
Consensus pattern (17 bp):
TCGCATTGCGATTTATT
Found at i:37311 original size:32 final size:33
Alignment explanation
Indices: 37257--37349 Score: 152
Period size: 32 Copynumber: 2.8 Consensus size: 33
37247 ACACAAATCG
*
37257 CATTGCGATTTTAATTTCGCGTTGCGATTTTGT
1 CATTGCGATTTTCATTTCGCGTTGCGATTTTGT
37290 CATTGCGA-TTTCATTTCGCGTTGCGATTTTGT
1 CATTGCGATTTTCATTTCGCGTTGCGATTTTGT
* *
37322 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CATTGCGATTTTCATTTCGCGTTGCGAT
37350 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 30 0.54
33 26 0.46
ACGTcount: A:0.14, C:0.18, G:0.22, T:0.46
Consensus pattern (33 bp):
CATTGCGATTTTCATTTCGCGTTGCGATTTTGT
Found at i:37368 original size:20 final size:19
Alignment explanation
Indices: 37334--37387 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 19
37324 TTGCGATTTT
*
37334 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
37353 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
37373 CATTTCGTGTTGCGA
1 CATTTCGCGTTGCGA
37388 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:37386 original size:19 final size:19
Alignment explanation
Indices: 37322--37387 Score: 78
Period size: 19 Copynumber: 3.4 Consensus size: 19
37312 GCGATTTTGT
**
37322 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
* *
37341 CATTGCGATAGCCATTTCCG
1 CGTTGCGATAGTCATTT-CG
37361 CGTTGCGATAGTCATTTCG
1 CGTTGCGATAGTCATTTCG
*
37380 TGTTGCGA
1 CGTTGCGA
37388 AAGTAAACTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
19 22 0.56
20 17 0.44
ACGTcount: A:0.15, C:0.23, G:0.24, T:0.38
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:37886 original size:18 final size:18
Alignment explanation
Indices: 37860--37904 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
37850 GTCGATCAGA
* *
37860 TGATGGCTCTGGGTGGGG
1 TGATGGCTCTGGGCGAGG
*
37878 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
37896 TGATGGCTC
1 TGATGGCTC
37905 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.11, C:0.16, G:0.47, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:39248 original size:20 final size:20
Alignment explanation
Indices: 39223--39276 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
39213 AATAGTTTCT
39223 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
** *
39243 GAAAATGACTATCGCAACGC
1 GAAAATGAAAATCGCAACAC
*
39263 GAAACT-AAAATCGC
1 GAAAATGAAAATCGC
39277 GTTGCGATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 6 0.21
20 22 0.79
ACGTcount: A:0.48, C:0.22, G:0.17, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:39535 original size:22 final size:22
Alignment explanation
Indices: 39510--39553 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
39500 GATTTAGATA
39510 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
39532 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
39554 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:39744 original size:21 final size:21
Alignment explanation
Indices: 39721--39816 Score: 83
Period size: 20 Copynumber: 4.7 Consensus size: 21
39711 CGCTTTGAAA
*
39721 ATCGCATTGCGATTATGTAAA
1 ATCGCATTGCGATTATGTAAT
* *
39742 ATCGCGTTGCGA--AAGTAAGT
1 ATCGCATTGCGATTATGTAA-T
* * * *
39762 ATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGATTATGTAAT
39783 ATCGCATTGCGA-TA-GTAAGT
1 ATCGCATTGCGATTATGTAA-T
39803 ATCGCATTGCGATT
1 ATCGCATTGCGATT
39817 TTCCCAATTC
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
19 8 0.14
20 25 0.42
21 23 0.39
22 3 0.05
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (21 bp):
ATCGCATTGCGATTATGTAAT
Found at i:39787 original size:41 final size:41
Alignment explanation
Indices: 39721--39818 Score: 133
Period size: 41 Copynumber: 2.4 Consensus size: 41
39711 CGCTTTGAAA
* *
39721 ATCGCATTGCGATTATGTAAAATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATTTTGTAAAATCGCATTGCGAAAGTAAGT
* * ** *
39762 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTAAGT
1 ATCGCATTGCGATTTTGTAAAATCGCATTGCGAAAGTAAGT
39803 ATCGCATTGCGATTTT
1 ATCGCATTGCGATTTT
39819 CCCAATTCGC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (41 bp):
ATCGCATTGCGATTTTGTAAAATCGCATTGCGAAAGTAAGT
Found at i:39833 original size:21 final size:21
Alignment explanation
Indices: 39804--39896 Score: 91
Period size: 20 Copynumber: 4.5 Consensus size: 21
39794 ATAGTAAGTA
39804 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
39825 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
*
39845 TTGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
39866 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
39886 TCGCATTGCGA
1 TCGCATTGCGA
39897 ATTGGGAAAA
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 31 0.55
21 25 0.45
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:39834 original size:41 final size:41
Alignment explanation
Indices: 39743--39877 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
39733 TTATGTAAAA
* * * ** *
39743 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-GTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
*
39783 ATCGCATTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* ** *
39825 TCGCGTTGCGAT-TTACTTATTTGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
39866 TCGCGTTGCGAT
1 TCGCGTTGCGAT
39878 TTACTTATTC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
40 4 0.05
41 74 0.93
42 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:39878 original size:41 final size:41
Alignment explanation
Indices: 39804--39896 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
39794 ATAGTAAGTA
39804 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
*
39845 TTGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
39886 TCGCATTGCGA
1 TCGCATTGCGA
39897 ATTGGGAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:51856 original size:22 final size:22
Alignment explanation
Indices: 51831--51972 Score: 113
Period size: 22 Copynumber: 6.5 Consensus size: 22
51821 TATGTCCCAG
* *
51831 AGGACTTATGCATGTATCCCGA
1 AGGACATATGCATATATCCCGA
* *
51853 AGGACATATGTATATGTCCCGA
1 AGGACATATGCATATATCCCGA
* * *
51875 AGGACATGTGTATATGTCCCGA
1 AGGACATATGCATATATCCCGA
* * *
51897 AGGACATGTGTATATGTCCCGA
1 AGGACATATGCATATATCCCGA
* * *
51919 AGGACATGTGTATATGTCCCGA
1 AGGACATATGCATATATCCCGA
* * * * *
51941 AGGACCTGTGTATATGTCCCTA
1 AGGACATATGCATATATCCCGA
*
51963 AGGACCTATG
1 AGGACATATG
51973 TAACCCTCGA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 112 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (22 bp):
AGGACATATGCATATATCCCGA
Found at i:51974 original size:22 final size:22
Alignment explanation
Indices: 51847--51967 Score: 215
Period size: 22 Copynumber: 5.5 Consensus size: 22
51837 TATGCATGTA
*
51847 TCCCGAAGGACATATGTATATG
1 TCCCGAAGGACATGTGTATATG
51869 TCCCGAAGGACATGTGTATATG
1 TCCCGAAGGACATGTGTATATG
51891 TCCCGAAGGACATGTGTATATG
1 TCCCGAAGGACATGTGTATATG
51913 TCCCGAAGGACATGTGTATATG
1 TCCCGAAGGACATGTGTATATG
*
51935 TCCCGAAGGACCTGTGTATATG
1 TCCCGAAGGACATGTGTATATG
*
51957 TCCCTAAGGAC
1 TCCCGAAGGAC
51968 CTATGTAACC
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 96 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (22 bp):
TCCCGAAGGACATGTGTATATG
Found at i:52447 original size:2 final size:2
Alignment explanation
Indices: 52440--52503 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
52430 TATCTACACA
52440 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52482 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
52504 CAGCATTCTA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:52751 original size:35 final size:35
Alignment explanation
Indices: 52685--52753 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
52675 GTTTCAAAAA
* * *
52685 TGGTATCGATACTATCTTTATTGTATTGATACCCT
1 TGGTATCGATACTATCTTCATAGTATCGATACCCT
52720 TGGTATCGATACTATCTTCCA-AGTATCGATACCC
1 TGGTATCGATACTATCTT-CATAGTATCGATACCC
52754 CATGAATGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 29 0.97
36 1 0.03
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (35 bp):
TGGTATCGATACTATCTTCATAGTATCGATACCCT
Found at i:59729 original size:15 final size:15
Alignment explanation
Indices: 59709--59783 Score: 87
Period size: 15 Copynumber: 5.0 Consensus size: 15
59699 TTAACATGTG
59709 AATGTTCTATGTGAA
1 AATGTTCTATGTGAA
*
59724 AATGTTATATGTGAA
1 AATGTTCTATGTGAA
* * *
59739 TATGTTTTATATGAA
1 AATGTTCTATGTGAA
* *
59754 AATGTGCTAAGTGAA
1 AATGTTCTATGTGAA
*
59769 AATGTTCTACGTGAA
1 AATGTTCTATGTGAA
59784 GATACCCTAT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 49 1.00
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (15 bp):
AATGTTCTATGTGAA
Found at i:59972 original size:23 final size:24
Alignment explanation
Indices: 59923--59991 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
59913 GGTTCTACAC
* *
59923 GGTCTTTC-GGACAAATTTCTACGT
1 GGTCCTTCAGGACAAA-TTATACGT
*
59947 GGTCCTT-GGGACAAATTATACGT
1 GGTCCTTCAGGACAAATTATACGT
*
59970 GGTTCTTCAGGACAAATTATAC
1 GGTCCTTCAGGACAAATTATAC
59992 ATGGCACTCG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.33
24 26 0.67
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (24 bp):
GGTCCTTCAGGACAAATTATACGT
Done.