genome.fa.s356.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000356.1 Hibiscus syriacus cultivar Beakdansim tig00000652_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63871

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219--269	21	2.4	21	80	0	66	31	23	17	27	1.97
242--359	61	1.9	62	82	6	150	31	31	16	20	1.95
803--859	23	2.5	24	77	5	64	28	0	3	68	1.06
4136--4172	16	2.4	15	90	4	56	70	0	0	29	0.88
6642--6714	29	2.5	29	93	0	128	39	23	6	30	1.81
9928--10170	6	41.2	6	96	3	458	50	16	0	32	1.46
11753--11797	23	2.0	23	100	0	90	53	15	22	8	1.69
15797--15870	38	1.9	38	97	0	139	39	9	27	24	1.86
21356--21427	31	2.3	31	100	0	144	18	27	26	27	1.98
21846--21889	22	2.0	22	81	4	52	45	0	4	50	1.22
24841--24881	20	2.0	20	85	0	55	43	21	21	12	1.85
25107--25149	16	2.7	16	96	0	77	46	23	18	11	1.82
26617--26662	19	2.4	19	100	0	92	30	15	6	47	1.70
27559--27598	16	2.5	17	84	12	57	40	0	0	60	0.97
32179--32211	15	2.1	16	88	5	50	9	24	15	51	1.72
32961--32993	16	2.0	17	94	5	59	36	24	6	33	1.80
34752--34795	13	3.4	13	80	0	52	15	2	13	68	1.31
34834--34904	34	2.1	34	87	10	101	19	2	14	63	1.42
39268--39302	18	1.9	18	94	0	61	28	14	5	51	1.65
43958--44073	21	5.6	21	69	10	60	32	27	18	21	1.96
44061--44253	20	9.6	20	84	5	246	34	27	19	18	1.95
44631--44701	33	2.2	33	94	0	124	11	23	16	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44781--44887	21	5.6	20	73	17	102	46	18	21	13	1.83
44842--44898	14	3.7	14	75	20	60	43	22	24	8	1.81
44835--44914	33	2.4	33	95	0	142	47	22	21	8	1.78
44910--45023	19	6.1	19	78	13	94	11	24	17	46	1.81
44940--45023	41	2.1	40	90	2	132	10	25	15	48	1.77
44939--45021	20	4.2	20	84	6	123	12	24	15	48	1.79
46698--47013	93	3.4	93	99	0	614	22	13	18	45	1.85
47111--47234	33	3.7	33	89	1	176	45	26	17	9	1.79
47147--47234	19	5.2	18	70	25	57	46	28	18	6	1.74
47160--47218	14	3.9	14	76	20	64	47	28	16	6	1.72
47238--47380	19	8.2	19	72	17	114	11	20	23	45	1.83
47238--47364	38	3.7	36	81	15	146	10	21	22	46	1.81
49301--49336	14	2.6	14	95	0	63	33	0	22	44	1.53
49443--49541	20	5.4	19	82	12	127	45	16	23	15	1.84
49443--49559	54	2.2	53	93	3	209	43	17	24	14	1.86
49550--49764	19	11.9	19	80	16	262	14	23	16	45	1.85
49556--49792	53	4.5	53	95	2	415	13	21	18	46	1.83
49574--49739	33	4.8	33	74	17	167	13	23	17	45	1.83
49627--49806	86	2.1	84	84	12	224	12	21	18	46	1.82
49556--49792	105	2.2	106	94	2	415	13	21	18	46	1.83
52274--52320	24	2.0	24	87	8	69	38	21	14	25	1.92
53009--53237	20	11.4	20	85	1	235	19	17	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53186--53361	20	8.8	19	71	10	84	17	17	25	39	1.92
55287--55316	14	2.1	14	93	0	51	50	6	0	43	1.28
55667--55699	17	1.9	17	100	0	66	54	6	0	39	1.25
55979--56041	7	9.3	6	83	14	63	20	0	31	47	1.51
55979--56041	27	2.3	26	84	10	81	20	0	31	47	1.51
58183--58231	11	4.5	11	84	0	71	28	8	26	36	1.85
60007--60048	21	2.0	21	95	0	75	38	19	11	30	1.88
63079--63114	17	2.1	18	94	5	65	36	5	0	58	1.22
63079--63114	18	2.1	17	89	5	54	36	5	0	58	1.22

Tables:   1

The End!