Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003560.1 Hibiscus syriacus cultivar Beakdansim tig00007516_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69631

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3197--3288
43
2.1
43
92
4
150
44
27
7
20
1.78
7899--7968
31
2.3
31
84
0
86
27
22
11
38
1.89
7916--7976
31
2.0
31
93
0
104
24
24
13
37
1.91
13504--13573
29
2.4
29
86
9
90
25
7
18
48
1.73
13591--13727
68
2.0
70
90
5
217
30
12
18
37
1.88
16503--16576
34
2.1
35
90
2
114
44
16
1
37
1.56
16572--16684
35
3.2
35
82
1
136
37
0
20
41
1.58
18113--18154
23
1.9
21
85
9
57
23
0
7
69
1.13
19415--19442
2
14.0
2
100
0
56
50
0
0
50
1.00
21808--21832
4
6.2
4
100
0
50
24
0
0
76
0.80
23665--23712
19
2.6
18
80
3
51
39
2
6
52
1.39
24027--24062
15
2.4
15
90
0
54
58
2
0
38
1.13
26331--26357
5
5.4
5
100
0
54
62
0
0
37
0.95
37638--37671
16
2.1
16
88
0
50
26
0
14
58
1.36
37825--37870
23
2.0
23
87
4
67
50
2
13
34
1.53
37830--37882
23
2.3
23
96
0
97
45
0
16
37
1.48
39754--39824
35
2.0
35
100
0
142
32
19
22
25
1.98
46626--46712
39
2.2
39
87
4
122
14
17
47
20
1.83
46867--46917
6
8.5
6
93
0
57
15
0
66
17
1.25
50336--50367
5
6.2
5
96
3
55
81
0
18
0
0.70
51487--51532
17
2.8
16
80
6
56
50
0
4
45
1.21
51776--51804
2
14.5
2
100
0
58
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53609--53652
22
2.0
22
86
0
61
45
6
0
47
1.29
54337--54402
24
2.6
25
85
4
89
42
3
3
51
1.32
59049--59124
39
2.0
37
82
7
91
48
3
0
47
1.20

Tables:   1

The End!