genome.fa.s3561.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003561.1 Hibiscus syriacus cultivar Beakdansim tig00007519_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63791

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953--1205	96	2.6	95	89	4	373	31	19	16	32	1.95
3802--3898	6	15.3	6	72	24	67	75	2	7	15	1.11
3802--3898	13	7.7	12	72	23	67	75	2	7	15	1.11
3802--3891	19	4.7	19	75	19	80	75	2	7	14	1.12
3821--3891	20	3.7	19	69	16	58	76	1	8	14	1.09
5133--5177	18	2.5	17	82	10	54	66	8	0	24	1.20
5251--5622	70	5.3	68	82	10	351	47	5	4	42	1.47
5287--5622	35	9.6	33	79	12	300	46	5	4	43	1.48
5287--5622	105	3.2	103	80	11	378	46	5	4	43	1.48
10441--10475	16	2.2	16	94	0	61	22	5	25	45	1.74
16895--16932	13	2.9	13	100	0	76	76	0	7	15	1.01
19070--19280	112	1.9	110	86	4	293	37	18	13	30	1.89
27505--27572	22	3.0	22	82	6	75	44	1	2	51	1.25
27536--27586	23	2.2	23	86	6	68	47	1	1	49	1.24
27559--27664	47	2.3	44	81	13	124	49	0	0	49	1.14
27768--28009	55	4.3	55	64	15	147	45	3	2	48	1.33
27698--28001	168	1.8	169	94	1	549	44	3	3	47	1.40
28007--28092	16	5.1	17	72	13	70	44	0	1	54	1.07
32384--32415	2	16.0	2	100	0	64	50	0	0	50	1.00
36063--36132	35	2.0	35	82	0	86	48	22	15	12	1.79
38847--39213	127	2.9	126	84	5	429	32	16	17	34	1.92
39928--40289	45	8.1	44	80	4	314	40	18	17	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39928--40289	90	4.0	90	79	3	363	40	18	17	23	1.91
39893--40289	135	2.9	135	80	5	401	39	18	18	23	1.92
40106--40352	45	5.9	41	75	12	150	40	20	15	22	1.90
40212--40365	77	2.0	79	85	3	213	41	20	16	22	1.90
40449--40543	37	2.5	38	84	5	113	47	13	16	22	1.82
41738--41787	20	2.5	20	83	0	64	30	34	10	26	1.89
41778--42005	60	3.8	60	80	5	223	42	22	14	20	1.88
41810--42011	20	10.1	20	79	6	194	44	22	14	19	1.86
41811--42009	40	5.0	40	83	3	240	43	22	14	19	1.87
42121--42171	22	2.3	22	89	0	84	23	43	11	21	1.85
42556--42603	20	2.5	20	89	3	71	10	18	20	50	1.76
42593--42632	20	2.0	21	90	5	64	15	20	15	50	1.79
42600--42643	20	2.2	20	83	0	52	18	18	13	50	1.79
44319--44399	42	1.9	42	85	5	110	27	34	17	20	1.95
44318--44415	42	2.3	42	77	6	108	29	32	16	21	1.95
44318--44417	21	4.8	20	72	19	64	29	32	18	21	1.96
45733--45908	66	2.6	65	88	7	255	27	2	16	53	1.55
46379--46414	18	2.0	18	94	0	63	16	2	25	55	1.55
47368--47404	18	2.1	18	89	0	56	51	10	5	32	1.60
47790--47839	25	2.0	25	92	0	82	46	22	6	26	1.74
48379--48414	18	2.0	18	94	0	63	19	0	22	58	1.40
51674--51816	60	2.4	60	76	4	146	22	13	21	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51734--51807	20	3.7	20	83	0	94	21	14	24	39	1.91
51734--51819	40	2.2	40	91	0	136	19	15	25	39	1.91
51673--51819	20	7.3	20	72	13	88	22	13	22	41	1.89
52137--52347	75	2.9	73	87	6	284	28	1	11	58	1.41
53016--53097	14	5.5	15	76	18	66	24	3	0	71	1.01
53042--53075	7	4.9	7	100	0	68	14	0	0	85	0.60
53042--53095	21	2.5	21	84	3	63	22	1	0	75	0.89
60306--60435	44	3.2	43	67	28	122	26	0	12	60	1.38
60306--60510	76	2.8	74	86	3	263	30	0	12	57	1.39
61792--61841	3	16.7	3	95	0	91	2	30	0	68	1.01
61854--61901	21	2.2	22	88	3	71	2	12	0	85	0.69

Tables:   1

The End!