genome.fa.s3562.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003562.1 Hibiscus syriacus cultivar Beakdansim tig00007520_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104616

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1376--1428	21	2.4	23	90	9	92	39	22	16	20	1.92
1376--1444	23	3.1	23	85	6	79	39	21	15	23	1.92
4903--5267	55	6.7	55	85	5	404	30	25	16	27	1.97
4909--5302	110	3.7	109	84	6	461	29	26	15	27	1.96
4914--5267	165	2.2	161	85	5	471	31	25	16	27	1.96
5304--5760	54	8.5	54	93	0	770	18	25	18	36	1.94
6137--6260	37	3.4	37	85	4	144	25	17	21	34	1.96
6168--6260	36	2.5	37	91	1	143	21	18	22	37	1.94
10858--10999	70	2.0	70	93	0	239	26	26	11	35	1.90
15241--15278	20	1.9	20	100	0	76	36	10	28	23	1.88
17171--17283	60	1.9	59	83	5	147	53	4	9	32	1.54
18006--18045	2	20.0	2	100	0	80	50	0	0	50	1.00
23254--23403	74	2.0	73	94	1	264	36	14	10	39	1.80
33014--33204	95	2.0	96	92	3	323	20	30	13	35	1.92
39504--39555	13	3.7	13	72	18	50	42	3	13	40	1.62
39504--39563	30	2.0	30	96	0	111	48	3	11	36	1.56
39507--39571	30	2.2	30	88	2	96	52	3	12	32	1.54
41837--41917	21	3.8	20	76	15	65	14	24	35	24	1.94
52192--52332	64	2.2	63	78	10	153	32	17	23	26	1.97
52320--52400	24	3.5	24	93	6	134	33	19	22	24	1.97
54462--54505	21	2.1	21	100	0	88	34	4	9	52	1.54
54466--54512	21	2.2	21	92	0	76	38	4	6	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67653--67728	4	19.0	4	83	5	55	26	11	47	14	1.79
67653--67728	8	9.5	8	82	0	80	26	11	47	14	1.79
67653--67728	16	4.8	16	83	0	89	26	11	47	14	1.79
68669--68732	24	2.8	24	71	21	66	29	15	29	25	1.96
69762--69804	5	8.6	5	100	0	86	39	0	20	39	1.53
74481--74525	23	2.0	23	86	0	63	26	28	24	20	1.99
75797--75831	18	1.9	18	88	11	54	22	17	5	54	1.64
76410--76454	21	2.1	21	87	0	63	15	24	28	31	1.96
92847--92901	21	2.6	21	94	0	92	25	21	12	40	1.89
93870--93910	21	2.0	21	95	0	73	36	14	19	29	1.92
97298--97361	33	1.9	33	96	0	119	42	26	9	21	1.83

Tables:   1

The End!