Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003564.1 Hibiscus syriacus cultivar Beakdansim tig00007526_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70727

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1528--1568
18
2.3
18
87
4
57
29
7
2
60
1.36
3560--3611
3
17.3
3
91
0
86
34
28
32
3
1.76
10773--10826
16
3.4
16
89
0
81
48
0
5
46
1.25
10780--10827
9
5.8
9
76
18
50
45
0
8
45
1.33
17560--17599
10
4.0
10
83
0
53
57
20
12
10
1.63
17561--17600
20
2.0
20
90
0
62
55
20
15
10
1.68
17581--17657
27
2.9
27
86
1
111
61
16
9
12
1.56
17600--17647
13
3.6
13
88
5
78
62
10
8
18
1.52
17586--17649
13
4.7
14
78
7
69
60
15
9
14
1.57
17929--17982
14
3.9
14
100
0
108
57
14
12
14
1.66
26870--26900
15
2.1
15
100
0
62
32
19
6
41
1.77
26986--27042
2
28.5
2
100
0
114
49
0
0
50
1.00
30241--30277
18
2.1
18
100
0
74
27
10
10
51
1.70
34209--34988
389
2.0
389
99
0
1542
26
18
19
36
1.94
40129--40162
16
2.1
16
94
0
59
26
11
29
32
1.92
41424--41481
20
2.9
20
84
0
80
27
20
18
32
1.97
45167--45215
19
2.5
20
77
9
57
55
6
6
32
1.49
48967--49002
16
2.2
17
90
5
56
47
0
2
50
1.15
50627--50673
23
2.0
23
84
15
62
23
2
10
63
1.37
50813--50857
20
2.3
20
80
3
56
46
6
2
44
1.42
51380--51409
16
1.9
16
93
6
53
73
3
6
16
1.18
51417--51446
15
1.9
16
93
6
53
76
3
6
13
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51516--51558
18
2.4
18
88
7
61
69
0
9
20
1.15
51690--51992
153
2.0
153
96
0
561
21
20
19
38
1.94
52508--52795
147
2.0
148
85
0
389
26
22
18
32
1.97
56103--56198
48
2.0
48
81
4
113
37
14
27
20
1.92
58711--58802
46
2.0
46
91
0
148
33
14
18
33
1.91
60072--60098
13
2.1
13
100
0
54
22
37
7
33
1.82
63446--63483
19
2.0
19
94
0
67
31
5
28
34
1.80
63496--63532
19
1.9
19
94
0
65
43
5
24
27
1.76

Tables:   1

The End!