genome.fa.s3566.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003566.1 Hibiscus syriacus cultivar Beakdansim tig00007530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113749

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7976--8041	27	2.3	29	84	5	82	51	0	6	42	1.26
8032--8061	10	3.1	10	95	4	53	50	0	0	50	1.00
10242--10365	57	2.2	57	95	0	221	20	16	16	45	1.85
11206--11248	19	2.3	19	80	4	52	74	0	6	18	1.04
11288--11335	2	24.0	2	95	0	87	52	0	0	47	1.00
11713--11803	42	2.1	45	81	8	107	58	2	6	32	1.36
12215--12352	37	3.8	36	83	6	163	30	14	13	42	1.84
12249--12349	34	2.9	35	91	8	161	28	14	12	43	1.83
13053--13502	105	4.3	105	92	2	703	22	18	27	32	1.97
14070--14559	73	7.2	64	72	14	214	38	11	19	30	1.88
14241--14499	36	7.3	36	77	11	248	41	13	18	26	1.88
14187--14548	138	2.6	137	87	1	503	39	12	19	28	1.88
15425--15475	22	2.3	22	96	0	93	25	11	27	35	1.91
16117--16160	23	2.0	23	86	4	63	0	20	4	75	0.98
17906--17945	18	2.2	18	100	0	80	35	12	32	20	1.90
20000--20071	37	2.0	36	81	13	85	51	5	8	34	1.55
20513--20549	14	2.6	15	83	12	51	67	2	5	24	1.25
20906--21043	37	3.8	36	83	6	163	30	14	13	42	1.84
20940--21040	34	2.9	35	91	8	161	28	14	12	43	1.83
26722--26746	13	1.9	13	100	0	50	56	16	28	0	1.41
31848--31976	60	2.1	60	85	1	168	37	6	25	30	1.82
31867--32002	60	2.3	60	82	0	164	39	6	24	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37409--37442	2	18.0	2	88	11	54	50	0	0	50	1.00
40602--40638	19	1.9	19	88	0	56	35	24	18	21	1.96
40666--40718	21	2.5	21	93	0	88	28	28	22	20	1.99
40727--40840	21	5.6	21	67	8	83	21	20	23	34	1.97
40752--40857	19	5.3	19	64	10	59	22	18	21	36	1.95
40733--40857	40	3.1	40	88	2	187	22	19	22	36	1.95
41089--41183	40	2.3	42	92	3	158	37	25	16	20	1.93
41114--41208	21	4.6	21	82	5	122	34	28	17	18	1.94
56718--56746	2	14.5	2	100	0	58	51	0	0	48	1.00
57744--57791	13	3.5	13	78	15	60	50	2	0	47	1.12
60577--60633	28	2.0	27	83	10	69	33	1	1	63	1.15
60608--60670	12	5.5	11	81	11	65	31	3	1	63	1.19
60615--60670	23	2.4	23	85	14	80	33	3	0	62	1.12
60684--60732	2	24.5	2	87	8	73	51	0	2	46	1.12
61184--61210	3	9.0	3	100	0	54	33	0	0	66	0.92
61526--61577	27	2.0	28	85	11	74	36	3	1	57	1.28
62048--62140	46	2.0	49	83	10	122	36	11	19	32	1.88
64040--64070	14	2.2	14	94	0	53	16	16	9	58	1.63
71151--71459	45	6.7	46	95	1	516	25	22	18	34	1.96
71585--71621	3	13.0	3	88	11	60	32	0	0	67	0.91
73248--73332	23	3.7	23	82	14	88	30	2	1	65	1.12
73248--73332	12	7.5	11	77	13	75	30	2	1	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73243--73332	34	2.6	34	78	15	96	31	2	1	65	1.12
73341--73379	2	19.5	2	89	0	60	48	0	2	48	1.15
77760--78095	43	7.9	43	74	14	259	31	18	23	25	1.98
77760--78043	42	6.7	42	73	11	211	32	19	23	24	1.98
77892--77965	39	1.9	39	91	2	123	32	22	25	18	1.97
77781--78152	42	8.8	42	71	17	200	31	18	23	26	1.98
77803--78128	127	2.6	125	79	11	308	32	18	23	25	1.97
77759--78092	170	2.0	168	82	8	412	32	18	23	25	1.97
81848--82226	41	9.4	41	73	10	253	32	18	19	29	1.96
82774--82807	15	2.4	14	90	5	50	17	2	0	79	0.86
83722--83791	20	3.5	20	100	0	140	44	15	20	20	1.87
84335--84394	19	3.1	19	87	2	93	45	21	21	11	1.84
84423--84511	14	5.6	14	70	23	61	10	23	23	42	1.84
84406--84560	33	4.5	33	89	6	202	11	22	20	45	1.83
84503--84560	20	2.9	20	82	10	73	13	22	18	44	1.85
86224--86478	94	2.7	94	96	0	458	20	11	19	48	1.79
86549--86575	12	2.2	12	100	0	54	0	7	18	74	1.05
86577--86617	19	2.2	19	90	0	64	12	19	21	46	1.82
87059--87152	42	2.2	42	81	7	102	24	31	20	23	1.98
88503--88538	14	2.6	14	95	0	63	33	0	22	44	1.53
88645--88794	19	8.7	19	72	20	132	45	19	24	11	1.83
88682--88738	14	3.7	14	75	20	60	43	21	24	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88663--88788	33	3.8	33	95	0	225	46	19	23	10	1.81
88800--88879	33	2.4	33	93	0	133	11	21	21	46	1.82
88821--88899	19	4.4	19	75	16	78	13	22	20	43	1.87
88852--88945	20	4.7	20	72	13	68	21	20	23	35	1.96
91208--91232	12	2.1	12	100	0	50	0	28	0	72	0.86
91407--91460	24	2.2	24	90	0	81	40	20	16	22	1.91
92190--92304	20	5.7	20	80	6	106	23	18	25	33	1.97
92170--92307	41	3.4	41	76	6	154	22	18	23	35	1.95
92232--92385	41	3.8	40	76	12	116	23	18	23	34	1.96
92197--92385	20	9.3	20	72	13	82	24	18	23	32	1.97
92989--93054	15	4.4	15	74	0	51	62	3	3	31	1.26
95571--95629	28	2.1	28	84	6	75	59	0	3	37	1.14
97622--97646	2	12.5	2	100	0	50	52	0	0	48	1.00
100493--100611	5	22.8	5	66	23	50	21	5	0	72	1.06
100558--100613	16	3.5	17	75	22	50	23	3	0	73	0.99
100498--100598	21	4.9	20	70	20	66	22	4	0	72	1.04
100553--100613	24	2.6	24	77	12	63	22	3	0	73	0.97
100551--100611	21	2.9	20	83	13	70	21	3	0	75	0.94
100487--100632	68	2.1	69	81	13	169	21	6	1	70	1.17
100779--100808	13	2.3	13	94	0	51	30	0	0	70	0.88
102562--102591	16	1.9	15	93	6	51	73	0	3	23	0.98
102662--102694	17	1.9	17	100	0	66	33	24	0	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103842--104014	73	2.3	72	85	3	220	29	27	20	23	1.99
111416--111523	46	2.3	46	85	4	146	31	14	23	30	1.94
111904--111935	12	2.7	12	90	0	55	46	6	9	37	1.61
112592--112646	27	2.0	27	82	0	65	25	12	49	12	1.76

Tables:   1

The End!