genome.fa.s3567.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003567.1 Hibiscus syriacus cultivar Beakdansim tig00007531_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95201

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319--544	59	3.8	59	88	1	278	30	22	12	34	1.92
319--544	118	1.9	117	85	4	312	30	22	12	34	1.92
3543--3645	3	34.3	3	94	3	181	33	0	0	66	0.99
3575--3653	15	5.4	14	90	3	50	36	1	0	62	1.04
4410--4537	46	2.8	46	94	2	215	33	10	18	37	1.85
6121--6255	39	3.5	39	81	8	132	23	22	17	36	1.95
7650--7742	35	2.7	35	86	3	127	31	7	22	38	1.82
9780--9813	13	2.6	13	95	0	59	73	2	14	8	1.19
15957--15986	15	2.0	15	93	0	51	70	0	0	30	0.88
18135--18174	19	2.1	19	90	0	62	10	32	0	57	1.32
22626--22726	23	4.6	21	70	16	71	26	18	23	30	1.98
22626--22728	44	2.3	44	90	3	163	27	19	23	30	1.98
28043--28197	64	2.4	64	77	7	163	31	17	22	28	1.96
30211--30240	15	2.0	15	93	0	51	33	36	0	30	1.58
30191--30235	21	2.1	21	87	0	63	33	31	2	33	1.70
30191--30239	18	2.7	18	78	6	55	32	34	2	30	1.69
32025--32068	20	2.2	20	100	0	88	40	13	27	18	1.88
33147--33189	20	2.2	20	83	8	52	58	2	16	23	1.50
35052--35092	21	2.0	21	90	0	64	41	19	0	39	1.52
37214--37256	22	2.0	22	95	0	77	48	4	2	44	1.36
39503--39961	81	5.7	80	82	4	458	20	18	25	35	1.95
39511--40293	162	4.9	159	77	9	690	20	18	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39898--40025	64	2.0	64	84	0	166	21	17	28	31	1.97
39837--40106	145	1.9	145	84	1	362	20	18	27	34	1.96
39961--40364	81	5.0	80	79	5	352	21	19	24	34	1.96
39735--40187	226	2.0	226	83	0	566	19	18	26	34	1.95
39654--40272	307	2.0	307	83	2	771	20	18	25	34	1.96
39609--40332	388	1.9	388	84	2	988	21	18	25	34	1.96
39976--40342	162	2.3	162	80	1	396	22	19	25	33	1.97
46291--46329	20	1.9	21	84	5	53	48	5	0	46	1.24
48291--48329	10	3.9	10	83	12	53	33	17	0	48	1.48
48372--48412	18	2.3	18	91	4	66	29	4	2	63	1.28
48474--48806	111	3.0	111	95	0	596	36	7	10	44	1.68
53552--53639	24	3.7	23	83	6	104	18	15	18	47	1.83
53552--53634	12	6.9	12	74	10	80	18	16	18	46	1.84
53555--53646	48	1.9	48	86	4	132	18	15	17	48	1.81
54753--54815	3	21.0	3	90	6	101	33	33	31	1	1.68
55027--55111	35	2.5	33	78	14	91	25	8	10	55	1.62
64673--64726	17	3.2	17	72	0	54	31	0	3	64	1.11
66256--66300	21	2.1	21	83	0	54	24	37	13	24	1.91
66307--66379	21	3.5	21	88	7	112	17	34	27	20	1.95
66902--66998	33	2.9	34	85	3	133	55	4	3	37	1.35
66900--67005	34	3.2	33	82	8	133	54	4	2	37	1.36
67399--67899	128	3.9	128	99	0	993	31	19	25	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67970--68010	8	5.2	8	82	5	57	36	29	0	34	1.58
74619--74647	13	2.2	13	100	0	58	13	0	0	86	0.58
74665--74811	6	23.3	6	68	24	65	19	3	1	76	1.00
74665--74698	16	2.1	17	89	10	54	14	2	5	76	1.09
74665--74702	16	2.4	16	84	16	53	13	2	5	78	1.02
74681--74759	26	3.0	26	81	9	79	20	5	1	73	1.09
74665--74799	14	9.8	13	73	18	71	19	3	1	75	1.03
74723--74819	9	11.6	9	79	8	82	20	2	0	77	0.87
74712--74863	33	4.7	31	71	17	105	19	3	2	75	1.07
74666--74854	40	4.5	41	75	15	115	20	3	2	74	1.08
74728--74844	54	2.4	48	81	11	130	20	1	2	75	1.01
79745--80568	84	9.8	84	82	2	879	31	24	19	24	1.98
81952--82056	8	12.8	8	70	18	65	16	3	0	80	0.86
81953--82048	21	4.7	20	74	16	72	16	4	0	79	0.89
81921--82051	14	9.3	14	71	17	85	16	4	1	77	1.02
81928--82048	42	2.9	40	76	16	111	16	4	1	76	1.03
81951--82063	11	10.1	11	69	16	63	17	3	0	78	0.88
81951--82056	9	11.7	9	71	15	76	16	3	0	80	0.86
81951--82051	42	2.4	42	80	8	118	16	3	0	79	0.88
82011--82069	28	2.1	28	81	6	66	15	1	3	79	0.94
82066--82109	21	2.1	21	83	4	54	18	4	6	70	1.27
83259--83372	60	1.9	60	85	3	158	35	7	24	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94182--94259	37	2.2	35	80	8	93	34	12	19	33	1.90
94530--94649	30	3.9	31	84	8	147	24	18	22	35	1.96

Tables:   1

The End!