genome.fa.s3569.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003569.1 Hibiscus syriacus cultivar Beakdansim tig00007535_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130218

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5859--5963	31	3.4	31	91	0	165	54	10	13	21	1.69
6068--6142	29	2.5	30	85	12	100	49	14	12	24	1.77
6485--6527	5	8.2	5	85	10	59	23	0	2	74	0.93
6485--6527	11	4.1	10	85	11	59	23	0	2	74	0.93
9967--10010	2	22.0	2	95	0	79	52	0	0	47	1.00
10488--10593	37	2.8	38	84	1	133	41	14	14	30	1.85
10949--10991	18	2.5	17	85	7	61	25	4	2	67	1.22
11470--11503	9	3.8	9	92	7	52	20	2	0	76	0.92
11459--11504	13	3.5	13	84	3	56	17	4	0	78	0.91
16047--16124	16	5.1	16	78	17	78	78	6	15	0	0.95
16053--16125	8	9.7	7	80	14	67	79	5	15	0	0.90
16892--16968	22	3.5	22	94	0	136	37	27	14	20	1.91
17913--18171	36	7.3	36	77	9	255	26	18	13	41	1.88
17847--18238	138	2.8	138	84	2	493	28	19	12	39	1.88
18133--18307	67	2.6	64	82	7	206	33	22	9	35	1.86
18912--19781	105	8.3	105	91	2	1315	33	26	18	22	1.97
20325--20429	37	2.8	37	85	0	138	41	14	14	29	1.85
20785--20827	18	2.5	17	85	7	61	25	4	2	67	1.22
21305--21338	9	3.8	9	92	7	52	20	2	0	76	0.92
21294--21339	13	3.5	13	84	3	56	17	4	0	78	0.91
22013--22075	28	2.2	28	97	0	117	33	11	14	41	1.81
25421--25553	23	5.9	23	86	10	186	28	26	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25559--25598	21	1.9	21	94	0	71	37	32	15	15	1.88
27510--27556	17	2.8	17	100	0	94	8	10	29	51	1.66
32838--32879	22	1.9	22	100	0	84	28	28	23	19	1.98
33942--33989	25	1.9	25	82	0	60	35	25	0	39	1.56
34713--34748	19	1.9	19	88	5	56	47	0	16	36	1.47
36622--36647	6	4.3	6	100	0	52	15	34	15	34	1.89
38754--38793	2	20.0	2	100	0	80	50	0	50	0	1.00
43386--43412	2	13.5	2	100	0	54	48	0	0	51	1.00
44855--44930	18	4.3	18	85	8	102	38	13	17	31	1.88
44855--44930	35	2.1	36	90	2	118	38	13	17	31	1.88
56300--56397	47	2.1	47	98	0	187	30	18	2	48	1.59
56730--56759	15	2.0	15	100	0	60	26	0	0	73	0.84
56775--56831	23	2.4	24	82	5	71	43	1	8	45	1.45
60494--60557	29	2.3	27	81	10	76	51	0	1	46	1.10
62849--62877	12	2.3	13	94	5	51	41	0	0	58	0.98
62847--62883	14	2.7	14	80	20	51	43	0	0	56	0.99
63712--63787	7	10.9	7	100	0	152	0	42	0	57	0.98
82012--82043	14	2.3	14	94	0	55	21	43	9	25	1.82
83730--83976	83	3.0	83	89	1	381	43	10	4	40	1.61
83953--84020	34	2.0	34	83	11	86	39	7	0	52	1.29
85438--85472	18	1.9	18	94	0	61	22	34	22	20	1.97
89891--89929	17	2.3	17	100	0	78	12	23	46	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89927--90023	19	5.1	19	80	10	108	28	26	26	17	1.98
89925--90029	29	3.7	28	76	12	99	29	26	27	16	1.97
97207--97243	17	2.2	17	95	0	65	16	24	40	18	1.90
97212--97266	22	2.5	22	90	0	83	12	20	47	20	1.82
97261--97359	9	10.3	9	76	12	72	28	26	29	16	1.97
97263--97360	19	5.1	19	86	3	115	28	26	27	17	1.98
97261--97339	9	8.3	9	76	9	77	26	27	30	15	1.96
110038--110083	20	2.3	20	88	3	67	36	0	26	36	1.57
111723--111756	6	5.7	6	89	0	50	20	11	14	52	1.73
111973--112003	16	1.9	16	100	0	62	38	16	6	38	1.74
112345--112369	6	4.2	6	100	0	50	64	0	0	36	0.94
115581--115633	8	7.0	7	80	6	52	52	20	0	26	1.46
115571--115632	23	2.7	23	95	2	108	51	24	0	24	1.48
121219--121275	30	2.0	29	89	6	89	35	21	7	36	1.80
121903--122010	26	4.2	26	96	0	198	37	7	27	27	1.84
122537--122650	16	7.1	15	72	18	79	63	17	4	14	1.47
122533--122662	32	4.1	32	76	6	129	63	16	4	16	1.47
123314--123463	13	11.2	13	74	13	126	48	14	10	27	1.76
123320--123380	22	2.8	21	73	14	61	47	16	6	29	1.72
123364--123476	26	4.3	27	82	6	110	47	12	13	26	1.78
123364--123474	52	2.1	52	86	3	152	47	12	13	26	1.78
124202--124293	46	2.0	46	100	0	184	56	8	6	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125411--125483	30	2.4	30	95	0	128	16	19	20	43	1.88
125437--125539	15	6.9	15	67	16	61	17	18	19	44	1.87
125441--125539	45	2.2	45	85	0	135	18	18	20	43	1.88
126222--126265	15	2.7	17	82	13	65	40	18	9	31	1.81
126348--126424	34	2.5	29	73	18	82	51	14	2	31	1.55
126357--126410	17	3.2	17	79	10	74	44	14	3	37	1.63
126397--126440	15	2.6	18	75	24	58	50	11	0	38	1.39
126408--126443	15	2.5	14	91	8	63	52	8	0	38	1.32
127024--127120	49	2.0	49	89	0	149	38	4	30	26	1.75
127219--127289	27	2.5	29	84	6	83	28	11	28	32	1.91

Tables:   1

The End!