genome.fa.s357.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000357.1 Hibiscus syriacus cultivar Beakdansim tig00000653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87444

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1391--1431	20	2.0	20	85	0	55	48	4	0	46	1.23
1761--1816	20	2.8	20	76	13	60	48	3	3	44	1.37
14450--14500	9	6.1	8	78	15	50	41	0	0	58	0.98
14444--14486	17	2.5	17	80	20	54	37	0	0	62	0.95
14444--14489	18	2.8	16	84	15	58	39	0	0	60	0.97
15152--15211	26	2.4	25	86	11	77	60	6	5	28	1.43
18602--18652	24	2.1	24	88	0	75	13	11	19	54	1.69
18626--18652	14	1.9	14	100	0	54	14	11	14	59	1.62
23111--23144	11	3.1	11	86	0	50	20	41	23	14	1.89
23942--23976	18	1.9	18	94	0	61	28	34	20	17	1.95
24977--25018	2	21.0	2	100	0	84	50	0	0	50	1.00
28933--28990	24	2.7	20	78	10	62	24	25	18	31	1.98
31605--31716	31	3.6	31	95	0	197	37	23	20	18	1.94
32518--32562	21	2.1	21	87	0	63	15	24	28	31	1.96
35719--35843	31	4.0	31	92	2	198	36	23	20	20	1.95
36645--36689	21	2.1	21	87	0	63	15	24	28	31	1.96
39816--39937	31	4.0	30	90	5	183	36	22	20	20	1.96
39816--39939	61	2.0	62	90	4	198	36	23	20	20	1.95
40743--40785	20	2.2	20	86	0	59	16	20	30	32	1.95
42215--42258	7	6.3	7	97	0	79	29	45	11	13	1.79
42215--42267	14	3.8	14	92	0	79	30	43	9	16	1.80
42215--42267	21	2.5	21	90	0	88	30	43	9	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47713--48023	156	2.0	156	98	1	599	31	21	16	29	1.96
48280--48368	12	7.2	12	72	22	53	74	3	6	15	1.17
49525--49561	3	12.3	3	100	0	74	67	0	0	32	0.91
49608--49652	19	2.4	18	82	13	56	48	6	4	40	1.49
49611--49664	25	2.2	25	83	6	65	50	7	5	37	1.54
49618--49664	24	1.9	25	86	4	69	48	6	6	38	1.54
50265--50855	85	7.1	84	77	6	301	26	21	22	29	1.99
50337--50855	85	6.2	85	78	5	488	25	21	23	29	1.99
50321--50770	165	2.7	165	88	0	659	26	21	23	28	1.99
50994--51192	106	1.9	106	92	0	335	24	17	24	34	1.96
51116--51280	88	1.9	88	97	0	312	25	13	26	34	1.93
51210--52103	106	8.4	106	93	1	1477	23	18	25	32	1.97
55973--56053	37	2.2	37	85	10	112	74	3	4	17	1.15
57252--57319	25	2.8	26	77	18	76	58	0	2	38	1.13
57318--57364	17	2.7	18	77	9	53	48	6	4	40	1.48
61369--61434	33	2.0	33	88	5	98	16	36	22	24	1.94
67593--67675	39	2.1	39	97	0	157	42	16	21	19	1.89
78552--78646	3	32.0	3	74	2	75	32	1	3	63	1.17
78567--78636	21	3.3	21	92	4	106	35	1	4	58	1.26
80369--80418	22	2.3	22	85	0	64	34	10	6	50	1.60
80608--80681	21	3.5	20	80	9	85	41	1	0	56	1.07
80604--80695	42	2.1	44	90	8	152	42	1	0	56	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80605--80681	22	3.6	21	81	8	102	41	1	0	57	1.07
80630--80698	21	3.3	20	73	13	68	42	0	0	57	0.98
80687--80728	20	2.2	19	87	8	59	35	0	0	64	0.94
80687--80729	18	2.2	20	88	8	63	34	0	0	65	0.93
81327--81384	28	2.2	26	81	6	62	31	5	1	62	1.27
82974--83002	13	2.3	13	94	5	51	24	13	6	55	1.63

Tables:   1

The End!