genome.fa.s3570.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003570.1 Hibiscus syriacus cultivar Beakdansim tig00007536_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90909

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6409--6448	18	2.2	18	86	0	53	50	0	42	7	1.30
6409--6448	12	3.3	12	85	0	53	50	0	42	7	1.30
10748--10820	2	37.0	2	97	2	139	49	0	0	50	1.00
14516--14560	15	3.1	15	83	6	56	33	8	22	35	1.85
14562--14602	14	2.9	14	85	0	55	31	12	17	39	1.86
14958--15006	26	1.9	25	87	4	71	53	2	0	44	1.12
14967--15016	20	2.5	20	78	15	52	52	2	0	46	1.12
15063--15111	22	2.2	22	88	0	71	46	0	0	53	1.00
15044--15119	30	2.4	32	83	14	97	48	0	0	51	1.00
15075--15131	22	2.7	21	81	10	62	50	0	0	49	1.00
15340--15432	42	2.2	42	86	0	123	48	12	15	23	1.79
15804--15851	21	2.3	21	96	0	87	29	10	10	50	1.70
24875--24931	30	1.9	30	88	0	87	40	8	21	29	1.83
25313--25338	4	6.5	4	100	0	52	76	0	0	23	0.78
28906--29368	112	4.1	112	94	0	773	45	13	15	25	1.82
29239--29876	182	3.5	182	93	0	1064	42	13	16	27	1.85
30472--30519	23	2.1	23	84	0	60	39	16	6	37	1.74
33079--33108	13	2.2	14	94	5	53	13	13	3	70	1.30
30812--33441	934	2.8	940	93	1	4492	30	12	17	39	1.86
35302--35356	25	2.2	25	100	0	110	25	21	10	41	1.86
35944--36190	123	2.0	122	88	2	361	34	10	23	31	1.88
44417--44441	13	1.9	13	100	0	50	32	20	8	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44461--44490	14	2.1	15	93	6	53	40	26	6	26	1.81
46356--46441	45	1.9	45	83	4	111	54	10	19	15	1.69
48231--48263	3	11.3	3	87	6	50	60	0	0	39	0.97
48374--48799	116	3.7	115	86	4	563	29	19	20	30	1.97
49454--49576	22	5.6	22	83	3	133	40	10	13	35	1.78
49938--50092	54	2.9	54	85	3	213	27	21	14	37	1.92
52987--53254	133	2.0	133	88	0	401	32	19	14	32	1.92
54335--54368	16	2.1	16	100	0	68	64	17	5	11	1.45
56744--56793	25	2.0	25	96	0	91	28	6	16	50	1.68
56751--56804	25	2.2	25	82	0	63	29	11	18	40	1.85
58545--58576	15	2.0	17	88	11	50	34	18	0	46	1.49
58673--58703	16	1.9	16	93	0	53	87	6	0	6	0.68
58671--58717	12	3.8	12	83	5	67	85	6	0	8	0.75
62816--62849	18	1.9	17	88	5	50	35	0	8	55	1.31
63076--63135	10	6.0	10	80	5	68	35	0	0	65	0.93
63356--63418	30	2.1	31	90	3	101	53	9	4	31	1.54
64027--64065	19	1.9	20	85	15	53	28	2	5	64	1.28
69752--69811	21	2.9	21	94	0	102	48	10	16	25	1.77
72037--72107	31	2.4	31	81	13	87	63	2	4	29	1.27
72168--72228	2	30.5	2	100	0	122	50	0	0	49	1.00
72614--72668	23	2.4	22	79	8	65	69	3	3	23	1.21
73345--73449	37	2.8	37	86	0	147	31	15	14	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74179--75659	106	14.0	106	90	2	2095	23	17	24	33	1.96
76487--76563	22	3.5	22	90	0	127	20	14	28	36	1.92
77159--77239	23	3.6	22	74	12	76	1	13	8	76	1.07
77182--77208	12	2.2	12	100	0	54	0	7	7	85	0.75
77168--77229	28	2.2	27	81	13	72	1	9	8	80	0.97
81923--81972	23	2.1	23	88	3	73	66	0	0	34	0.92
82229--82428	26	7.5	27	68	20	84	68	1	5	25	1.19
82308--82480	74	2.4	74	77	12	175	70	1	5	22	1.15
82378--82481	14	7.5	13	71	20	54	71	0	3	24	1.09
82570--82595	2	13.0	2	100	0	52	50	0	0	50	1.00
83032--83130	37	2.7	36	79	11	103	32	16	12	39	1.85
83730--83769	21	1.9	21	85	10	55	12	10	40	37	1.77
86881--86928	21	2.3	21	89	7	71	35	18	8	37	1.81
88775--89326	48	11.9	48	83	7	701	28	17	14	38	1.89
88633--89322	92	7.5	93	82	7	752	29	17	14	38	1.89
88633--89326	275	2.5	273	82	8	775	29	17	14	38	1.89

Tables:   1

The End!