genome.fa.s3573.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003573.1 Hibiscus syriacus cultivar Beakdansim tig00007542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85273

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5021--5457	214	2.0	215	90	3	695	24	11	27	37	1.90
5938--6066	21	6.3	20	79	6	109	28	20	19	31	1.97
6900--6952	24	2.2	24	93	3	90	18	16	20	43	1.88
9445--9499	19	2.8	19	83	2	65	38	21	21	18	1.94
9472--9598	33	3.8	33	93	0	218	46	18	23	11	1.82
9452--9602	19	8.7	18	67	22	83	45	19	23	11	1.83
9918--9965	25	1.9	25	95	0	87	37	33	0	29	1.58
10000--10061	20	3.2	20	86	4	99	50	17	22	9	1.75
9994--10123	19	7.3	19	72	18	118	47	20	22	9	1.78
9994--10120	33	3.7	33	87	6	164	48	20	22	9	1.78
10150--10233	33	2.5	33	90	0	132	7	22	23	46	1.76
10130--10258	20	7.2	19	74	19	98	8	20	22	48	1.77
10195--10252	19	3.0	20	84	5	91	8	22	18	50	1.74
10345--10814	94	5.1	94	92	2	729	47	19	11	22	1.81
12501--12578	19	4.1	19	81	6	95	44	19	20	15	1.86
12574--12654	33	2.5	33	89	4	128	11	19	20	48	1.79
12638--12709	20	3.5	20	84	5	92	12	16	19	51	1.76
13243--13314	20	3.5	20	88	3	117	19	22	19	38	1.93
13240--13329	41	2.2	41	85	0	126	26	20	18	34	1.96
13311--13356	21	2.2	21	88	0	65	36	17	28	17	1.92
13729--13767	16	2.4	16	91	0	69	30	30	5	33	1.79
21716--21792	35	2.2	35	90	0	118	38	22	1	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22087--22124	2	19.0	2	100	0	76	50	0	0	50	1.00
22198--22222	10	2.5	10	100	0	50	68	0	0	32	0.90
22168--22249	42	2.0	42	80	4	94	59	1	3	35	1.23
23598--23654	24	2.4	24	96	0	105	26	8	21	43	1.81
39905--39978	37	2.0	38	81	7	89	52	2	4	40	1.34
40123--40160	20	1.9	20	88	0	58	21	26	10	42	1.85
43841--43882	2	21.0	2	100	0	84	50	0	0	50	1.00
46045--46072	14	2.0	14	100	0	56	7	28	21	42	1.79
53623--53891	135	2.0	135	85	1	360	28	17	25	28	1.98
60901--60948	25	1.9	25	95	0	87	54	2	8	35	1.42
63450--63495	24	1.9	24	95	0	83	4	39	6	50	1.48
68572--68617	24	1.9	24	95	0	83	4	39	6	50	1.48
84790--84815	8	3.2	8	100	0	52	26	34	38	0	1.57

Tables:   1

The End!