genome.fa.s3574.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003574.1 Hibiscus syriacus cultivar Beakdansim tig00007543_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65737

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
792--956	90	1.8	91	90	1	269	42	18	9	29	1.82
1675--1733	31	1.9	31	92	0	100	42	5	8	44	1.57
1757--1989	22	10.6	22	85	6	305	48	8	0	42	1.37
1757--1989	66	3.5	66	90	5	355	48	8	0	42	1.37
3629--3662	2	17.0	2	100	0	68	50	0	0	50	1.00
4749--4827	32	2.5	32	82	0	86	39	5	17	37	1.72
6492--6544	17	3.1	17	80	0	70	45	7	13	33	1.71
9610--9644	15	2.3	15	95	0	61	45	17	8	28	1.77
12639--12674	17	2.1	17	89	0	54	44	5	13	36	1.68
21366--21483	21	5.7	21	71	6	80	35	26	16	21	1.95
21470--21643	20	8.6	20	82	5	208	35	26	18	19	1.95
22025--22095	33	2.2	33	89	0	106	11	23	16	47	1.79
22174--22251	41	1.9	41	97	0	147	44	16	25	12	1.83
22175--22250	21	3.7	21	83	3	109	46	17	25	11	1.82
22235--22272	14	2.7	14	100	0	76	42	23	26	7	1.81
22284--22381	19	5.7	19	70	22	81	10	24	22	42	1.84
22306--22395	14	5.7	14	74	23	81	8	25	23	42	1.83
22289--22403	33	3.5	33	95	0	212	9	24	20	45	1.81
24099--24572	93	5.1	93	99	0	921	22	12	18	45	1.83
24616--24744	19	7.3	19	75	17	125	45	28	17	8	1.77
24652--24744	33	2.8	32	91	4	150	46	27	18	7	1.76
24616--24744	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24740--24874	19	7.6	19	75	16	128	11	19	23	45	1.82
24762--24818	14	3.7	14	77	20	60	10	21	22	45	1.82
24745--24837	33	2.8	33	95	0	168	10	20	21	47	1.80
26793--26827	13	2.6	14	90	4	54	31	0	22	45	1.53
26934--27033	19	5.5	19	81	12	129	46	16	22	16	1.84
26934--27050	53	2.2	53	92	1	191	44	16	23	15	1.85
27040--27207	19	9.6	19	76	18	177	14	23	17	44	1.86
27046--27207	33	4.7	33	74	16	159	14	22	17	45	1.85
27040--27207	52	3.2	52	97	0	309	14	23	17	44	1.86
27265--27362	19	5.4	19	84	13	143	45	17	22	14	1.84
27265--27381	53	2.2	53	98	1	227	44	17	23	13	1.85
29684--29708	12	2.1	12	100	0	50	0	28	0	72	0.86
29881--29927	24	2.0	24	87	8	69	38	21	14	25	1.92
30607--30836	20	11.5	20	86	1	246	19	17	25	37	1.94
31091--31437	188	1.8	188	88	1	534	45	10	5	38	1.62
32018--32070	26	2.0	26	96	0	97	16	22	22	37	1.94
33946--34185	130	1.8	131	93	0	419	42	18	13	24	1.87
34388--34456	34	2.0	35	97	2	131	30	23	8	37	1.85
36872--36908	2	18.5	2	100	0	74	48	0	0	51	1.00
36979--38063	540	2.0	543	98	1	2106	37	16	15	30	1.90
40113--40171	31	1.9	31	96	0	109	54	13	11	20	1.70
40113--40178	31	2.1	31	91	0	105	54	12	12	21	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43271--43312	22	1.9	22	90	0	66	26	28	23	21	1.99
44289--44313	12	2.1	12	100	0	50	40	16	0	44	1.47
47391--47463	18	3.9	18	83	11	94	27	31	20	20	1.97
47388--47463	39	2.0	38	92	2	125	27	30	19	22	1.98
58081--58120	19	2.1	19	85	0	53	55	0	0	45	0.99
58139--58172	12	2.8	12	95	0	59	35	52	2	8	1.47
63158--63214	30	1.9	28	82	10	69	33	22	8	35	1.85

Tables:   1

The End!