genome.fa.s3575.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003575.1 Hibiscus syriacus cultivar Beakdansim tig00007545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56540

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163--261	8	12.1	8	77	4	90	36	28	2	33	1.69
743--893	59	2.5	60	88	1	214	26	25	14	33	1.94
2858--2886	15	1.9	15	100	0	58	17	20	20	41	1.90
4791--4818	14	2.0	14	100	0	56	57	7	0	35	1.26
6760--6854	30	3.2	30	78	12	106	35	8	0	55	1.30
6883--6972	29	3.0	29	75	4	99	38	11	0	50	1.38
6884--6985	29	3.5	29	76	5	89	40	10	0	49	1.38
11188--11260	30	2.4	30	90	0	119	30	23	20	26	1.99
11234--11314	31	2.6	30	76	5	72	30	23	18	27	1.98
12416--12556	64	2.2	63	83	3	176	24	24	18	32	1.97
15954--16086	30	4.4	30	94	0	221	30	22	21	25	1.98
16060--16153	31	3.1	30	75	4	89	30	23	18	27	1.97
15954--16111	60	2.6	60	88	1	199	32	23	20	24	1.98
16069--16164	31	3.1	30	74	12	88	32	20	19	27	1.97
17202--17278	20	3.7	20	79	14	75	24	24	23	27	2.00
17247--17407	64	2.5	63	80	5	180	24	24	19	31	1.98
22593--22728	46	2.9	46	83	3	164	27	11	22	38	1.88
27169--27396	125	1.8	125	80	3	280	33	14	25	26	1.95
29087--29710	54	11.6	54	96	0	1050	35	17	25	21	1.95
29685--29808	55	2.3	55	80	9	139	29	17	23	29	1.97
30335--30417	43	1.9	43	87	4	123	43	25	12	19	1.85
33756--33786	2	15.5	2	93	0	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34097--34234	60	2.3	59	73	14	129	40	14	6	38	1.72

Tables:   1

The End!