Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003576.1 Hibiscus syriacus cultivar Beakdansim tig00007549_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121837

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1327--1371
20
2.3
20
92
3
74
28
15
6
48
1.70
1361--1459
33
3.0
33
94
1
164
32
7
15
45
1.73
1445--1499
13
4.2
13
75
13
58
34
3
12
49
1.59
1904--1947
17
2.6
17
78
3
54
31
9
9
50
1.65
2042--2073
16
2.0
17
88
11
50
43
21
21
12
1.86
3840--3948
54
2.0
54
100
0
218
37
18
16
27
1.92
7511--7575
24
2.7
23
77
18
62
40
6
0
53
1.26
7506--7575
23
3.0
22
77
18
70
41
5
0
52
1.25
7554--7626
26
2.8
26
85
4
94
41
2
0
56
1.14
7575--7624
25
2.0
26
92
4
84
38
2
0
60
1.09
7556--7632
25
2.7
28
75
17
79
40
2
0
57
1.13
7583--7643
30
2.0
30
87
9
88
40
1
0
57
1.08
7554--7643
27
3.2
26
75
20
83
43
2
0
54
1.12
7753--7820
31
2.2
31
94
0
118
51
8
8
30
1.63
7889--7923
15
2.2
16
90
5
54
51
0
0
48
1.00
8642--8671
10
2.9
10
95
5
51
26
0
0
73
0.84
17753--17790
20
1.9
20
88
0
58
26
34
26
13
1.93
18134--18167
16
2.1
16
88
0
50
47
8
20
23
1.78
18394--18441
22
2.2
22
82
14
64
37
12
10
39
1.77
19676--19759
32
2.6
31
88
5
132
38
2
5
53
1.38
20720--20789
27
2.6
27
93
0
113
25
17
22
34
1.96
30937--30994
29
2.0
29
93
0
98
20
3
15
60
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37157--37221
34
1.9
34
93
0
112
18
13
18
49
1.80
38862--38901
19
2.1
19
100
0
80
5
47
7
40
1.54
55368--55426
21
2.9
20
82
5
73
15
23
33
27
1.95
61042--61066
13
1.9
13
100
0
50
40
8
8
44
1.63
61227--61275
25
2.0
25
83
0
62
18
24
6
51
1.69
66642--66684
22
2.0
22
90
9
70
44
4
9
41
1.57
73242--73276
15
2.3
15
95
0
61
14
20
34
31
1.92
73495--73535
20
2.0
20
90
9
66
43
4
9
41
1.59
74570--74595
13
2.0
13
100
0
52
23
30
7
38
1.83
76246--76294
14
3.5
14
82
0
62
26
32
18
22
1.97
83295--83671
55
6.9
55
75
13
264
22
4
20
52
1.64
83277--83551
27
10.0
28
70
16
150
22
4
20
53
1.63
83351--83608
80
3.1
81
92
4
401
21
5
20
52
1.65
83277--83519
135
1.8
132
91
5
398
22
4
19
53
1.63
83405--83552
30
5.3
30
74
14
127
20
4
22
51
1.66
83523--83665
52
2.7
52
82
7
144
22
5
19
52
1.66
83670--83785
53
2.2
52
88
7
166
31
2
24
41
1.68
85811--85860
15
3.4
14
86
8
64
58
14
20
8
1.61
85826--85864
14
2.7
15
88
8
62
61
10
23
5
1.48
86884--86921
18
2.1
18
100
0
76
31
15
5
47
1.68
96196--96236
2
20.5
2
100
0
82
51
0
0
48
1.00
96409--96500
15
6.1
15
97
0
175
26
27
26
20
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101634--101686
26
2.0
26
96
0
97
22
13
43
20
1.86
103898--103929
15
2.1
15
94
0
55
50
15
25
9
1.74
112790--112819
2
15.0
2
100
0
60
50
0
50
0
1.00
113385--113655
131
2.1
131
82
6
331
43
5
7
43
1.54
113775--113819
21
2.2
20
88
11
65
64
0
4
31
1.13
115064--115366
137
2.2
137
86
2
412
24
14
25
35
1.94
118433--118495
27
2.3
27
91
0
108
47
4
11
36
1.60
118743--118773
2
15.5
2
100
0
62
51
0
0
48
1.00
118909--118937
2
14.5
2
100
0
58
51
0
0
48
1.00
119176--119220
21
2.2
20
88
11
65
64
0
4
31
1.13
120104--120170
31
2.1
32
97
2
127
2
31
32
32
1.73

Tables:   1

The End!