Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003578.1 Hibiscus syriacus cultivar Beakdansim tig00007551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105866

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3655--3717
25
2.5
25
94
0
108
26
19
7
46
1.77
4013--4077
28
2.4
28
92
2
105
18
20
10
50
1.76
7779--7811
17
2.0
17
88
5
50
6
12
21
60
1.53
15643--15717
37
2.0
36
85
10
98
45
1
4
49
1.29
16295--16359
29
2.2
29
86
0
85
49
18
18
13
1.80
16353--16406
20
2.7
20
97
0
99
33
7
5
53
1.52
16354--16418
20
3.2
20
88
2
58
40
6
3
50
1.43
17014--17435
37
11.6
35
81
8
436
45
4
6
44
1.48
17017--17435
73
5.7
73
85
7
498
44
4
6
44
1.49
17430--17487
21
2.8
21
84
5
73
24
1
3
70
1.12
18456--18500
18
2.5
17
82
7
54
24
6
0
68
1.13
18522--18577
19
3.0
18
76
21
53
28
1
0
69
0.98
21223--21289
28
2.4
28
97
0
125
29
34
17
17
1.94
21309--21399
45
2.0
46
89
2
139
28
24
19
27
1.99
26881--26961
23
3.7
23
73
14
80
25
25
23
24
2.00
28766--28864
45
2.2
45
85
5
146
26
24
18
31
1.97
30723--30915
95
2.0
95
91
0
314
32
19
18
29
1.96
32075--33614
84
18.5
84
82
3
1621
32
24
18
24
1.97
34202--34629
36
11.8
36
85
7
457
44
3
6
45
1.48
34204--34630
147
3.0
145
85
9
545
44
3
6
45
1.47
34204--34625
73
5.8
74
85
7
505
44
3
6
45
1.47
35778--35889
5
21.2
5
71
20
52
19
4
3
72
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35770--35814
17
2.6
17
89
3
63
22
6
0
71
1.09
35821--35895
17
4.9
15
71
20
57
21
2
1
74
1.01
35837--35894
12
4.6
12
79
14
55
22
3
0
74
0.97
35808--36063
139
1.9
137
79
9
288
17
6
5
70
1.29
37136--37173
2
19.0
2
100
0
76
50
0
0
50
1.00
38184--38236
24
2.2
25
82
3
63
41
1
5
50
1.36
44786--44882
29
3.3
29
92
0
167
24
17
19
38
1.93
45076--45104
2
14.5
2
100
0
58
51
0
0
48
1.00
52825--52885
23
2.7
22
80
5
86
26
29
26
18
1.98
54940--55007
2
34.0
2
100
0
136
50
0
0
50
1.00
62081--62116
10
3.6
10
88
0
54
66
0
0
33
0.92
62081--62137
20
3.0
20
77
17
75
63
0
0
36
0.95
62081--62136
17
3.0
19
79
12
71
64
0
0
35
0.94
62447--62493
19
2.5
19
86
6
60
65
2
2
29
1.15
70664--70693
11
2.7
11
94
0
51
63
6
3
26
1.35
70700--70782
14
6.7
12
68
21
55
77
8
0
14
0.99
70686--70739
22
2.5
22
85
8
67
77
5
1
14
1.03
70711--70765
17
3.2
17
78
14
60
78
7
0
14
0.96
70686--70763
27
2.9
26
75
9
68
76
6
1
15
1.04
70706--70784
5
15.2
5
72
17
54
75
8
0
15
1.02
70953--70997
23
2.0
23
86
0
63
57
4
8
28
1.48
72237--72275
18
2.2
18
86
9
53
61
0
15
23
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72237--72288
28
1.9
27
84
7
70
63
0
15
21
1.31
72308--72541
72
3.4
68
73
13
181
44
7
3
44
1.49
72386--72453
33
2.1
31
84
10
84
44
5
5
44
1.52
72497--72615
39
3.2
35
77
16
98
44
6
5
43
1.52
72387--72585
107
1.9
108
82
11
257
42
6
5
45
1.53
73369--74435
84
12.9
82
76
8
868
24
20
23
30
1.99
73286--74435
164
7.0
164
89
2
1552
25
20
23
30
1.99
77816--77862
19
2.4
20
92
3
78
70
8
10
10
1.35
79628--79657
11
2.7
11
94
0
51
63
6
3
26
1.35
79664--79747
12
6.7
12
67
27
50
77
8
0
14
0.99
79670--79730
19
3.4
18
78
10
63
78
6
0
14
0.94
79672--79749
35
2.3
35
84
8
106
75
8
0
15
1.03
79650--79729
28
2.9
27
78
7
81
77
6
1
15
1.02
79670--79749
5
16.2
5
71
17
60
76
8
0
15
1.02
79916--79960
23
2.0
23
86
0
63
57
4
8
28
1.48
81200--81238
18
2.2
18
86
9
53
61
0
15
23
1.33
81200--81251
28
1.9
27
84
7
70
63
0
15
21
1.31
81460--81542
35
2.3
37
81
10
91
43
7
6
43
1.56
87125--87168
5
9.4
5
80
14
58
36
0
0
63
0.95
87127--87169
13
3.2
13
87
9
59
37
0
0
62
0.95
87126--87168
18
2.6
16
86
13
61
34
0
0
65
0.93
93610--93634
13
1.9
13
100
0
50
40
8
8
44
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95865--95944
20
3.8
21
75
14
74
15
25
35
25
1.94
99737--99777
21
2.0
21
85
9
57
36
9
2
51
1.48

Tables:   1

The End!