Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000358.1 Hibiscus syriacus cultivar Beakdansim tig00000654_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134106

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7288--7312
13
1.9
13
100
0
50
32
16
20
32
1.94
22751--22785
18
1.9
18
94
0
61
40
2
14
42
1.60
39127--43904
602
8.0
595
97
1
8901
33
17
13
35
1.88
46090--46158
35
2.0
35
100
0
138
57
10
8
23
1.59
46165--46190
12
2.2
12
100
0
52
42
15
0
42
1.47
46158--46200
15
3.1
14
80
19
54
46
13
2
37
1.57
47010--47039
14
2.2
14
94
5
53
23
6
0
70
1.11
48911--48984
37
2.0
36
84
7
96
47
4
1
47
1.29
54892--54923
2
16.0
2
100
0
64
0
50
0
50
1.00
54923--54974
2
26.0
2
86
7
70
46
0
3
50
1.20
55590--55645
23
2.3
23
87
6
76
30
1
1
66
1.12
55578--55636
12
5.1
12
74
15
52
32
1
3
62
1.21
61750--61804
26
2.1
27
83
10
69
49
1
1
47
1.23
73438--73473
2
18.0
2
100
0
72
50
0
0
50
1.00
73822--74134
84
3.8
82
85
2
383
28
18
18
34
1.95
73838--74145
125
2.5
123
84
1
391
29
20
17
32
1.95
73822--74134
41
7.5
41
86
2
383
28
18
18
34
1.95
74315--74442
41
3.1
40
84
8
118
40
21
12
25
1.88
74336--74446
41
2.7
40
87
5
143
36
20
13
28
1.91
77691--77742
18
2.9
17
80
13
52
63
1
0
34
1.06
84335--84450
43
2.7
42
87
2
151
33
25
14
25
1.94
90150--90224
38
2.0
38
81
5
89
54
1
1
42
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98292--98347
19
2.9
19
74
12
53
67
1
3
26
1.16
103739--103763
7
3.6
7
100
0
50
56
16
28
0
1.41
113091--113133
23
1.9
22
90
4
68
60
9
0
30
1.28
114725--114863
20
6.8
20
73
4
109
25
23
15
35
1.94
114747--114884
40
3.5
40
82
4
136
25
23
16
34
1.96
114746--114920
20
8.8
20
77
2
118
28
22
17
32
1.96
115467--115549
20
4.2
20
76
0
94
38
10
20
30
1.87
115546--115595
22
2.4
21
83
6
57
34
10
28
28
1.89
115588--115698
20
5.6
20
70
9
84
24
16
25
34
1.95
115579--115697
40
3.0
40
77
8
109
25
16
24
33
1.96
124021--124064
18
2.4
18
96
0
79
18
6
25
50
1.71
132391--132520
69
1.9
66
92
4
206
7
31
6
53
1.56

Tables:   1

The End!