genome.fa.s3580.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003580.1 Hibiscus syriacus cultivar Beakdansim tig00007555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160925

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5545--5573	14	2.1	14	93	6	51	20	6	0	72	1.07
11317--11364	14	3.5	14	81	13	64	43	0	2	54	1.12
11306--11353	3	16.0	3	85	8	62	37	0	2	60	1.09
12721--12750	3	10.0	3	92	0	51	33	3	0	63	1.11
13585--13652	18	3.5	18	73	21	57	27	5	4	61	1.38
20410--20622	114	1.9	114	93	2	365	33	15	18	32	1.93
23876--23966	45	2.0	47	93	4	159	23	24	20	31	1.98
23898--24192	76	3.9	76	95	0	513	22	21	21	35	1.96
24126--24223	45	2.2	45	96	0	178	21	22	20	35	1.96
24050--24315	121	2.2	121	93	1	451	22	21	21	34	1.97
23974--24391	197	2.1	197	96	0	764	22	22	21	34	1.97
24171--24465	76	3.9	76	97	0	540	21	22	21	34	1.97
23876--24496	273	2.3	273	98	0	1206	21	22	21	34	1.96
24399--24501	45	2.3	45	96	0	188	22	21	20	35	1.96
24624--24662	18	2.2	18	100	0	78	38	0	0	61	0.96
24630--24706	25	3.1	23	85	12	100	40	1	1	57	1.15
24630--24695	3	22.0	3	77	11	64	37	1	1	59	1.16
26096--26125	3	10.0	3	92	0	51	33	3	0	63	1.11
26334--26398	2	32.5	2	96	0	121	47	0	0	52	1.00
29908--29961	20	2.7	18	78	18	54	42	0	3	53	1.18
31650--31833	39	4.7	39	81	7	194	17	25	25	32	1.97
32606--32645	21	2.0	20	95	5	71	45	20	5	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32895--32936	21	2.0	21	85	4	57	26	0	26	47	1.52
38410--38512	43	2.4	43	88	3	163	45	5	3	44	1.46
39521--39584	11	5.7	11	72	27	55	68	0	3	28	1.04
39523--39594	21	3.2	21	74	18	65	68	0	4	27	1.08
39554--39611	13	4.5	12	73	14	53	67	0	5	27	1.12
39554--39611	25	2.2	27	81	6	66	67	0	5	27	1.12
39521--39595	10	6.6	12	75	15	63	68	0	4	28	1.08
41416--41450	3	11.7	3	87	0	52	2	31	2	62	1.24
46991--47108	21	5.6	21	76	15	118	19	20	24	35	1.96
46997--47122	42	3.0	42	94	0	225	20	19	23	36	1.95
47846--47904	25	2.6	21	76	19	64	30	27	20	22	1.98
47913--47965	21	2.5	21	90	6	81	18	22	30	28	1.98
49495--49523	3	9.7	3	100	0	58	34	0	0	65	0.93
54088--54179	15	6.0	15	68	14	55	50	4	1	44	1.29
63532--63561	15	2.0	15	93	0	51	40	30	6	23	1.80
64696--64748	21	2.5	21	100	0	106	18	28	33	18	1.95
75948--75979	15	2.1	15	94	0	55	6	25	15	53	1.65
77354--77732	30	12.7	29	74	12	223	40	8	0	49	1.38
77367--77481	59	1.9	59	89	3	178	38	6	0	53	1.34
77623--77676	23	2.2	24	83	6	65	38	9	0	51	1.34
77644--77721	32	2.5	30	89	4	120	39	8	0	51	1.34
77739--77845	31	3.5	31	75	2	90	50	0	5	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77766--77873	30	3.6	30	76	6	85	50	2	6	40	1.43
77813--77873	29	2.1	29	84	6	79	54	3	6	36	1.43
78402--78433	16	2.0	16	93	0	55	9	18	28	43	1.81
79119--79165	19	2.4	19	79	10	51	36	0	0	63	0.94
79131--79448	136	2.3	136	86	1	424	40	3	2	53	1.31
85851--85884	17	2.0	17	100	0	68	17	17	29	35	1.93
86477--86502	2	13.0	2	100	0	52	50	0	0	50	1.00
88991--89045	16	3.4	16	85	5	74	27	27	7	38	1.83
94399--94423	2	12.5	2	100	0	50	52	0	0	48	1.00
95697--95761	26	2.5	25	80	9	69	70	1	7	20	1.19
95793--95833	17	2.4	18	84	12	59	65	4	9	19	1.40
95826--95931	38	2.7	40	80	11	103	67	0	12	19	1.21
95826--95889	19	3.4	18	74	18	58	71	0	14	14	1.14
96016--96079	2	32.5	2	82	14	80	53	1	1	43	1.19
96032--96106	31	2.4	30	86	8	98	54	2	2	40	1.28
96071--96119	23	2.1	23	81	7	55	63	6	2	28	1.30
98088--98455	106	3.5	106	92	0	594	21	19	25	33	1.97
99444--99498	18	3.3	18	76	23	66	1	16	3	78	0.98
99562--99600	15	2.6	14	84	15	51	5	12	0	82	0.83
99562--99600	16	2.5	15	88	12	53	5	12	0	82	0.83
99546--99596	21	2.4	21	87	9	77	3	11	1	82	0.89
99563--99600	10	3.6	11	82	10	53	5	13	0	81	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109662--109727	26	2.6	25	80	9	71	71	1	7	19	1.18
109759--109799	17	2.4	18	84	12	59	65	4	9	19	1.40
109792--109879	38	2.2	40	77	20	96	68	0	15	15	1.22
109998--110080	2	42.5	2	95	4	152	51	0	0	48	1.00
110068--110116	23	2.1	23	85	7	64	61	6	2	30	1.32
113176--113206	14	2.2	14	94	0	53	0	16	0	83	0.64
114683--114773	45	2.0	45	100	0	182	34	6	17	41	1.75
117532--117574	17	2.5	17	84	0	59	37	23	25	13	1.92
122711--122750	14	2.9	14	85	7	55	37	20	10	32	1.85
135401--135438	20	1.9	20	88	0	58	42	0	13	44	1.43
142392--142435	14	3.1	14	96	3	79	6	34	0	59	1.24
148948--149034	2	49.0	2	71	22	52	42	0	0	57	0.98
148960--149043	34	2.5	33	96	1	150	41	0	0	58	0.98
149036--149073	20	1.9	20	89	10	60	18	10	31	39	1.85
150602--150679	34	2.3	34	93	2	131	15	32	19	33	1.93
155102--155143	2	21.5	2	95	4	77	50	0	0	50	1.00
155234--155274	2	20.5	2	100	0	82	51	0	48	0	1.00

Tables:   1

The End!