genome.fa.s3581.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003581.1 Hibiscus syriacus cultivar Beakdansim tig00007557_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65832

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--206	54	3.9	53	76	11	172	38	20	9	31	1.84
2207--2239	16	2.1	16	94	0	57	3	24	0	72	0.98
3694--3745	20	2.6	20	87	0	68	50	11	21	17	1.77
10638--10682	19	2.4	19	92	0	72	35	4	13	46	1.63
12897--12990	45	2.1	45	91	0	152	26	1	21	51	1.55
13184--13316	40	3.3	39	66	19	103	50	17	13	18	1.78
13187--13346	80	2.0	80	93	0	275	48	16	14	20	1.81
20946--20998	21	2.5	21	81	6	72	20	26	18	33	1.96
20988--21039	21	2.5	21	81	3	61	38	17	21	23	1.93
21028--21077	20	2.5	20	100	0	100	30	26	20	24	1.98
21069--21141	21	3.5	21	74	10	69	23	20	17	38	1.93
21154--21217	21	3.1	21	81	4	85	43	14	18	23	1.86
21159--21216	20	2.8	21	84	5	82	43	15	20	20	1.88
21758--21812	19	2.8	20	86	2	85	43	21	21	12	1.86
21838--21929	19	5.1	19	76	14	104	10	22	20	45	1.82
23623--23927	94	3.3	94	93	2	503	21	12	18	46	1.82
24350--24438	42	2.1	42	81	8	101	24	34	19	21	1.96
24378--24438	21	3.0	20	69	7	50	24	36	18	21	1.95
25921--26000	14	4.7	18	69	25	59	47	20	21	11	1.80
25921--26000	33	2.4	33	91	0	124	47	20	21	11	1.80
26010--26104	34	2.8	33	87	9	147	11	23	18	46	1.82
28422--28446	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28621--28674	24	2.2	24	90	0	81	40	20	16	22	1.91
29419--29533	20	5.8	20	95	0	185	26	20	29	24	1.99
29414--29592	20	8.7	20	83	8	171	25	18	26	30	1.98
29521--29613	41	2.2	43	81	11	102	23	16	21	38	1.92
29581--29632	20	2.5	21	81	3	61	21	21	17	40	1.91
30977--31014	16	2.4	17	82	13	53	26	5	2	65	1.27
31340--31387	2	24.0	2	100	0	96	50	0	0	50	1.00
34485--34540	9	6.3	9	79	8	62	85	5	8	0	0.73
34485--34540	11	5.2	10	75	23	51	85	5	8	0	0.73
34483--34546	16	3.8	16	86	13	85	82	6	10	0	0.82
34485--34546	25	2.4	25	82	15	74	85	4	9	0	0.73
34476--34558	33	2.5	32	80	9	96	79	6	14	0	0.91
35146--35188	22	2.0	22	90	4	70	39	23	11	25	1.88
36152--36275	36	3.4	36	82	6	151	25	19	13	41	1.88
36251--36407	68	2.4	68	83	5	196	31	22	8	36	1.85
37046--37663	105	6.0	105	92	2	975	33	26	17	22	1.96
37046--37662	207	3.0	207	91	3	967	33	26	17	22	1.96
38816--38858	18	2.5	17	85	7	61	25	4	2	67	1.22
38888--38940	17	3.2	16	76	10	54	30	3	0	66	1.10
39175--39216	2	21.0	2	95	0	75	50	2	0	47	1.14
49304--49361	8	6.6	8	79	13	53	70	0	3	25	1.03
49291--49362	36	2.0	37	86	13	105	68	0	4	27	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50772--50800	14	2.1	14	100	0	58	13	20	13	51	1.75
51103--51296	84	2.3	85	86	3	257	23	18	25	32	1.97
51289--51407	33	3.6	34	89	6	190	31	10	18	40	1.84
51393--51746	37	10.1	36	74	16	309	37	14	20	27	1.91
51390--51581	67	2.8	69	82	10	207	38	14	20	26	1.91
51527--51557	15	2.1	15	93	0	53	35	9	19	35	1.85
51631--51746	36	3.2	36	92	1	196	36	12	20	30	1.90
51417--51741	174	1.9	175	88	4	505	38	13	20	27	1.90
51643--51771	36	3.6	34	85	9	159	37	13	20	27	1.91
59956--60011	23	2.5	23	88	2	78	23	33	21	21	1.97
61594--61634	18	2.3	18	91	0	64	46	21	31	0	1.52

Tables:   1

The End!