genome.fa.s3582.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003582.1 Hibiscus syriacus cultivar Beakdansim tig00007558_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40178

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6812--6931	36	3.3	37	85	10	158	34	5	17	43	1.71
11397--11457	21	3.2	21	65	29	64	31	4	21	42	1.74
11389--11507	35	3.3	37	88	8	174	31	5	19	43	1.72
18149--18179	4	7.8	4	100	0	62	25	0	0	74	0.82
22647--22689	20	2.2	20	91	0	68	23	25	9	41	1.84
22651--22699	20	2.5	20	86	0	62	22	20	10	46	1.80
23677--23738	32	1.9	32	96	0	115	25	37	19	17	1.94
23916--23960	23	2.0	23	86	8	65	11	17	26	44	1.82
25190--25235	20	2.3	19	89	10	74	54	10	17	17	1.70
25360--25397	20	1.9	20	100	0	76	52	13	15	18	1.74
29456--29503	18	2.6	19	86	6	71	31	2	10	56	1.45
30007--31502	195	7.7	199	92	4	2555	36	15	15	31	1.90
30007--31502	590	2.6	585	93	4	2566	36	15	15	31	1.90
32920--33011	6	15.3	6	77	0	58	35	8	34	20	1.84
32935--33024	3	30.0	3	78	0	81	35	6	34	23	1.81
32920--33024	12	9.0	12	79	6	81	36	7	34	21	1.82
34474--34800	179	1.8	181	90	3	534	34	14	17	33	1.90
37328--37390	22	2.8	23	78	4	74	36	6	19	38	1.77
37400--37438	20	2.0	20	89	0	60	25	15	10	48	1.76
37737--37800	23	2.8	23	82	0	83	35	6	18	39	1.76
37811--37847	19	1.9	19	88	0	56	27	16	10	45	1.80
38069--38119	25	2.0	25	92	0	84	33	7	19	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38344--38398	24	2.3	25	81	9	69	32	5	14	47	1.67
38363--38399	18	2.1	18	89	0	56	32	5	10	51	1.60
38646--38726	38	2.2	37	86	6	110	46	22	13	17	1.82
39055--39098	21	2.2	20	87	4	61	36	13	11	38	1.81
39116--39178	22	2.8	23	80	4	74	33	7	20	38	1.82
39137--39187	23	2.3	22	86	10	68	31	3	19	45	1.69
39647--39688	16	2.6	16	84	3	57	23	26	16	33	1.96

Tables:   1

The End!