genome.fa.s3583.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003583.1 Hibiscus syriacus cultivar Beakdansim tig00007559_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143932

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3222--3284	31	2.0	31	87	6	92	46	14	22	17	1.84
5773--5869	48	2.0	48	100	0	194	29	22	18	28	1.97
6854--6948	48	2.0	48	95	0	172	22	20	28	29	1.98
11207--11271	3	21.7	3	80	12	62	63	0	30	6	1.19
14273--14971	114	6.2	114	79	4	689	40	13	10	35	1.78
14273--15013	113	6.5	114	77	6	511	39	13	9	36	1.77
16564--16623	29	2.1	29	87	0	84	43	5	15	36	1.68
18445--18655	36	5.9	36	97	0	395	26	16	16	41	1.88
20738--20796	23	2.6	23	94	0	100	67	1	13	16	1.30
20738--20828	46	2.0	45	83	12	114	65	1	14	18	1.32
31389--31439	25	2.0	25	96	0	93	29	0	5	64	1.17
33887--33934	13	3.8	13	91	5	80	45	2	12	39	1.54
33887--33941	25	2.1	25	86	6	74	45	3	10	40	1.57
33927--34009	26	3.2	26	63	14	62	38	3	7	50	1.47
35431--35487	13	4.4	13	82	6	71	40	8	5	45	1.58
35431--35466	14	2.6	14	91	4	56	41	8	8	41	1.65
35430--35487	27	2.2	25	85	8	80	41	8	5	44	1.57
35640--35695	24	2.6	21	79	17	69	48	3	3	44	1.37
35633--35688	24	2.3	23	88	8	85	46	3	3	46	1.37
35634--35722	34	2.6	33	82	8	106	49	2	3	44	1.31
35725--35767	15	2.8	15	89	3	59	53	9	0	37	1.33
35776--35831	13	4.3	13	88	6	87	41	8	5	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35783--35831	25	1.9	26	95	4	91	40	10	4	44	1.57
35787--35852	25	3.0	21	81	14	53	43	7	4	43	1.53
36853--36986	20	6.7	20	79	9	121	33	24	18	23	1.97
36915--36966	19	2.7	20	87	3	79	26	28	23	21	1.99
36850--36980	60	2.2	61	87	1	183	35	24	17	22	1.95
37441--37504	20	3.2	20	86	0	83	15	18	21	43	1.87
38824--38868	18	2.5	18	81	0	63	28	44	13	13	1.81
39344--39410	20	3.4	20	81	2	73	38	23	22	14	1.92
39399--39490	14	5.9	14	76	22	85	48	20	17	13	1.80
39383--39507	33	3.8	33	97	0	232	48	20	18	13	1.81
39383--39512	19	7.6	19	73	23	137	46	20	19	13	1.83
40288--40397	42	2.6	41	81	5	105	23	19	32	24	1.97
40327--40406	42	1.9	42	89	0	124	25	16	36	22	1.94
40628--40812	91	2.0	90	90	6	291	47	18	12	22	1.82
42509--42622	14	6.4	19	76	14	61	43	21	24	10	1.83
42545--42581	14	2.6	14	100	0	74	40	24	27	8	1.83
42572--42648	19	4.3	19	75	21	94	45	22	22	10	1.82
43252--43468	20	10.6	20	69	16	97	27	20	19	32	1.97
43294--43366	21	3.5	21	81	3	85	36	19	21	21	1.95
43231--43483	41	6.2	40	76	9	165	29	19	20	31	1.97
43231--43483	82	3.1	80	70	10	215	29	19	20	31	1.97
43458--43510	21	2.5	22	81	6	74	33	18	26	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45596--45644	19	2.7	17	84	9	53	26	18	30	24	1.98
45596--45775	64	2.8	63	80	6	204	28	16	25	29	1.97
45722--45760	19	2.1	19	90	0	60	33	15	30	20	1.94
48597--48656	30	2.0	30	93	6	104	33	6	16	43	1.74
48736--48793	21	2.8	21	89	0	98	22	39	17	20	1.92
48985--49024	21	1.9	21	90	10	64	40	37	10	12	1.77
49240--49309	34	2.1	32	86	5	95	31	15	30	22	1.95
50170--50217	19	2.5	20	82	3	62	52	6	12	29	1.63
51454--51512	30	2.0	30	93	6	102	33	5	16	44	1.70
51592--51666	21	3.5	21	92	3	123	22	37	16	24	1.93
53671--53719	20	2.5	20	86	3	64	55	4	10	30	1.52
56138--56178	21	1.9	22	85	5	57	39	19	17	24	1.92
62496--62695	35	5.8	35	86	2	278	36	21	21	21	1.96
71790--71833	18	2.5	18	88	3	63	31	15	6	45	1.73
76993--77025	17	1.9	17	93	0	57	15	3	6	75	1.11
79344--79462	60	2.0	60	86	3	168	27	19	22	30	1.98
81029--81070	18	2.3	18	88	8	59	45	0	0	54	0.99
81035--81083	24	2.0	23	84	7	62	48	0	0	51	1.00
81732--81924	20	9.6	20	84	5	246	34	27	19	18	1.95
82301--82371	33	2.2	33	94	0	124	11	23	16	47	1.79
82451--82543	21	4.6	20	80	9	116	47	18	20	13	1.82
82451--82543	42	2.3	41	87	5	134	47	18	20	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82566--82693	19	7.1	19	71	19	87	10	25	18	45	1.82
82588--82644	14	3.7	14	75	20	60	8	24	22	43	1.81
82571--82693	33	3.5	33	88	10	165	10	24	18	46	1.81
82629--82693	21	3.1	21	82	4	96	10	26	15	47	1.78
84377--84692	93	3.4	93	98	0	614	22	13	18	45	1.85
84790--84883	33	2.8	33	88	1	125	44	26	20	8	1.80
84822--84899	19	4.4	19	79	15	94	46	28	17	7	1.76
84895--85067	19	9.6	19	74	12	141	10	19	23	46	1.81
84917--84973	14	3.7	14	75	20	51	10	22	22	43	1.84
84900--84992	33	2.8	33	95	0	168	10	21	21	46	1.81
84895--85065	33	4.7	38	78	8	128	10	19	22	46	1.80
86993--87028	14	2.6	14	95	0	63	33	0	22	44	1.53
87167--87214	20	2.4	20	92	0	87	45	14	22	16	1.84
87245--87484	72	3.4	70	82	11	269	13	22	17	45	1.84
87229--87498	105	2.6	109	91	7	425	13	22	18	45	1.83
87229--87498	53	5.1	52	89	8	406	13	22	18	45	1.83
89776--89800	12	2.1	12	100	0	50	0	28	0	72	0.86
89975--90021	24	2.0	24	87	8	69	38	21	14	25	1.92
90713--90903	20	9.6	20	84	4	215	21	17	25	35	1.95
90890--90941	20	2.6	20	81	6	61	11	17	26	44	1.83
107113--107408	80	3.7	80	85	3	400	23	20	24	31	1.98
112427--112649	71	3.0	72	82	9	286	21	19	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112498--112709	80	2.7	80	88	2	302	22	20	25	31	1.98
114872--114898	12	2.2	12	100	0	54	48	0	0	51	1.00
117217--117254	3	12.7	3	100	0	76	31	0	0	68	0.90
121577--121639	29	2.2	29	100	0	126	28	28	25	17	1.97
127046--127079	2	17.0	2	100	0	68	50	0	0	50	1.00
128498--128568	16	4.2	16	75	16	63	12	5	4	77	1.09
128504--128564	24	2.4	25	78	15	63	11	6	4	77	1.12
128540--128582	16	2.6	16	85	3	50	13	11	2	72	1.22
132367--132724	94	3.7	96	87	4	499	33	16	17	32	1.93
133632--133673	17	2.5	17	96	0	75	33	11	14	40	1.82
134052--134168	36	3.2	36	91	3	182	30	19	11	38	1.87
134183--134305	36	3.4	36	89	2	176	28	19	10	41	1.85
134053--134445	138	2.8	137	93	2	671	29	18	11	41	1.85
134329--134482	36	4.2	36	90	2	227	28	18	12	40	1.86
134192--134582	175	2.2	173	89	1	586	28	18	12	41	1.86
134068--134582	138	3.8	131	83	9	390	27	18	12	41	1.86
134423--134645	102	2.2	102	84	4	292	29	18	13	39	1.88
135240--135305	2	33.0	2	100	0	132	50	0	0	50	1.00
136518--136615	45	2.3	43	78	13	105	29	4	4	62	1.32
136692--136769	16	5.1	15	70	14	52	12	10	3	73	1.23
143167--143247	12	6.7	12	73	18	78	40	0	1	58	1.06
143171--143251	13	6.4	14	73	21	56	40	0	1	58	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143174--143236	23	2.6	25	80	17	78	42	0	1	55	1.09
143167--143245	25	3.2	24	75	20	67	41	0	1	56	1.07
143150--143297	61	2.5	60	85	12	205	41	0	2	56	1.10
143256--143314	24	2.4	25	80	8	68	42	1	1	54	1.20
143528--143601	30	2.5	29	76	10	71	60	4	1	33	1.24
143792--143852	31	2.0	31	87	6	88	39	13	6	40	1.70

Tables:   1

The End!