genome.fa.s3585.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003585.1 Hibiscus syriacus cultivar Beakdansim tig00007561_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147319

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786--995	36	5.9	36	96	1	386	41	16	16	25	1.88
2529--2553	7	3.6	7	100	0	50	88	0	0	12	0.53
2800--2859	29	2.1	29	87	0	84	36	15	5	43	1.68
4424--5116	227	3.1	219	81	7	779	36	10	13	39	1.79
4427--5116	113	6.2	113	78	6	645	35	10	13	40	1.79
8110--8189	3	27.0	3	85	7	101	5	31	0	63	1.15
12443--12537	48	2.0	48	95	0	172	29	28	20	22	1.98
13524--13620	48	2.0	48	97	0	185	27	19	22	29	1.98
16106--16168	31	2.0	31	87	6	92	17	22	14	46	1.84
21239--21297	23	2.6	23	94	2	102	54	0	6	38	1.27
22106--22140	16	2.2	16	89	0	52	71	0	0	28	0.86
22729--22808	26	2.8	29	77	14	94	21	17	26	35	1.95
24435--24481	20	2.5	20	86	10	64	23	10	31	34	1.89
32179--32287	32	4.0	26	71	18	71	54	16	0	29	1.43
32111--32797	54	12.5	55	71	17	402	52	13	0	33	1.43
32230--32499	32	9.6	31	69	27	194	51	14	0	32	1.47
32403--32520	26	4.5	26	71	23	102	53	17	0	28	1.44
32349--32579	80	2.9	79	95	2	408	52	15	0	32	1.46
32400--32474	22	3.2	23	75	17	82	54	17	0	28	1.43
32526--32879	32	11.4	32	75	17	214	53	13	0	32	1.39
32143--32834	224	3.1	224	91	5	1059	52	14	0	32	1.44
32446--32723	144	1.9	144	96	0	511	53	13	0	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32590--32879	80	3.5	80	93	3	465	53	13	0	32	1.40
32706--32779	22	3.2	22	70	16	60	55	17	0	27	1.42
32815--32916	22	4.5	22	72	7	96	51	9	0	38	1.35
32859--32942	15	5.2	15	77	19	80	51	3	0	45	1.18
35101--35145	21	2.1	21	87	0	63	31	28	24	15	1.96
37059--37126	23	3.0	23	86	0	91	20	26	26	26	1.99
39932--39976	19	2.4	19	100	0	90	51	0	4	44	1.21
40097--40127	16	1.9	16	100	0	62	12	16	25	45	1.83
40614--40649	15	2.4	15	95	0	63	30	11	27	30	1.91
42742--42890	79	1.9	79	100	0	298	24	12	14	48	1.78
45275--45376	3	34.0	3	95	0	132	58	0	0	41	0.98
45279--45376	27	3.6	27	94	0	160	58	0	0	41	0.98
53654--53702	15	3.5	13	78	15	53	75	0	4	20	0.96
54292--54325	13	2.7	12	90	9	50	79	0	11	8	0.94
54429--54567	73	1.9	74	88	2	210	56	11	3	28	1.52
64216--64557	81	4.2	81	92	1	499	28	24	13	33	1.93
64507--64829	68	4.8	68	92	0	538	30	25	14	30	1.95
65036--65245	110	1.9	111	88	3	318	34	18	10	36	1.86
65041--65245	55	3.7	55	82	2	243	35	17	11	36	1.86
67498--67630	42	3.2	41	69	14	119	38	17	18	26	1.92
67666--67699	13	2.6	13	100	0	68	44	8	17	29	1.79
67679--67822	41	3.5	41	85	2	193	32	14	21	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67679--67854	41	4.3	42	81	6	191	32	14	19	32	1.92
67679--67829	82	1.9	82	85	4	216	31	13	20	33	1.92
69844--69897	21	2.5	21	88	8	74	27	9	16	46	1.78
69886--69942	22	2.6	22	91	0	96	28	1	24	45	1.63
76810--76901	21	4.4	21	77	8	89	42	16	39	2	1.60
76810--76901	42	2.2	42	80	3	105	42	16	39	2	1.60
77297--77390	43	2.2	42	83	7	109	34	26	17	22	1.96
77309--77520	43	4.9	43	80	4	203	36	25	13	25	1.92
77310--77521	87	2.5	85	78	4	210	36	24	13	25	1.92
79126--79201	36	2.1	36	85	7	100	47	1	3	47	1.29
79530--79588	20	2.8	20	73	14	57	44	1	3	50	1.28
80965--81019	29	1.9	28	85	10	76	36	1	10	50	1.48
81136--81177	18	2.3	18	80	8	50	47	2	0	50	1.14
81137--81176	19	2.2	18	86	4	53	45	2	0	52	1.14
85172--85352	65	2.8	64	82	5	213	27	17	25	29	1.97
85302--85350	19	2.7	18	84	9	64	24	16	34	24	1.95
91783--91822	21	1.9	21	85	10	55	35	10	2	52	1.48
93749--93929	64	2.8	63	83	3	218	27	17	26	29	1.97
93877--93927	19	2.7	19	85	8	70	25	15	35	23	1.94
93770--93929	65	2.5	65	86	3	216	27	16	26	30	1.97
93771--93978	65	3.2	63	79	13	210	27	17	25	29	1.97
94444--94497	26	2.1	25	86	3	72	51	9	7	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99811--99951	71	2.0	72	85	1	194	35	18	21	24	1.95
100848--100890	23	1.9	22	85	4	59	51	2	4	41	1.35
101416--101445	14	2.1	15	93	6	53	70	0	0	30	0.88
104320--104361	22	2.0	22	90	4	68	26	0	30	42	1.55
106534--106585	25	2.1	25	89	3	79	50	11	7	30	1.67
115901--115949	20	2.5	20	82	0	62	32	10	20	36	1.86
119144--119379	118	2.0	114	86	4	330	52	3	13	30	1.57
119345--119407	28	2.3	27	86	2	81	49	9	11	30	1.70
120864--120972	39	2.8	39	85	2	139	24	11	20	44	1.84
125028--125066	18	2.1	19	85	4	53	12	10	10	66	1.44
129116--129215	52	1.9	52	95	0	182	36	21	14	29	1.92
134902--134972	24	2.9	24	76	2	61	7	18	32	42	1.77
134998--135054	18	3.5	18	68	26	63	14	21	26	38	1.91
134974--135062	30	3.1	30	93	4	148	13	20	26	39	1.90
135046--135074	15	1.9	15	100	0	58	0	20	34	44	1.52
135571--135627	9	6.0	9	74	11	51	3	21	31	43	1.69
145699--145789	23	4.0	23	85	0	128	17	27	25	29	1.97
146014--146053	19	2.1	19	86	9	55	50	0	15	35	1.44

Tables:   1

The End!