Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003586.1 Hibiscus syriacus cultivar Beakdansim tig00007564_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75767

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
292--1734
105
14.0
106
86
5
1849
23
17
24
34
1.96
2548--2624
22
3.5
22
90
0
127
20
14
28
36
1.92
3213--3282
15
4.4
15
72
21
54
1
11
10
77
1.07
3222--3278
25
2.3
25
87
6
80
1
10
8
78
1.02
3236--3268
10
3.3
10
87
12
50
0
12
9
78
0.95
3236--3295
25
2.4
25
77
8
59
1
15
8
75
1.12
7803--7850
18
2.4
20
80
13
55
62
0
16
20
1.33
8267--8517
49
5.3
47
68
20
125
66
1
5
26
1.20
8265--8355
23
4.0
22
74
16
71
67
0
4
28
1.10
8318--8358
13
3.3
13
83
6
50
65
0
0
34
0.93
8315--8355
17
2.4
17
84
11
57
68
0
0
31
0.90
8272--8381
23
5.4
20
71
19
52
65
0
4
29
1.18
8341--8387
11
4.2
11
81
10
51
68
2
6
23
1.24
8314--8429
26
4.4
25
66
24
69
68
0
5
25
1.16
8329--8494
71
2.4
73
76
13
165
68
1
6
24
1.20
9040--9144
37
2.8
37
82
5
131
31
16
12
40
1.85
9747--9786
21
1.9
21
85
10
55
12
10
40
37
1.77
13022--13069
21
2.3
21
89
7
71
35
18
8
37
1.81
14788--15501
48
15.0
48
86
2
960
29
17
14
38
1.89
14788--15501
141
5.0
142
87
3
913
29
17
14
38
1.89
17268--17309
22
1.9
22
90
0
66
35
2
19
42
1.64
17324--17436
60
1.9
60
86
0
163
32
15
13
38
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21936--22001
34
1.9
34
87
6
98
30
10
7
51
1.64
32468--32594
52
2.4
52
97
0
236
27
14
22
35
1.93
36878--36923
3
15.3
3
95
0
83
65
0
2
32
1.05
36880--36930
9
5.7
9
95
0
66
60
0
5
33
1.21
48553--48628
15
5.3
15
68
17
54
40
3
2
52
1.34
48538--48629
42
2.2
42
92
1
150
41
4
4
50
1.42
48911--48970
25
2.4
25
88
0
93
10
25
3
61
1.43
49957--50013
25
2.3
25
90
6
89
63
3
26
7
1.36
59022--59059
16
2.4
16
95
0
67
34
7
28
28
1.85
59141--59321
93
1.9
93
87
2
265
29
11
22
36
1.89
63584--63647
26
2.5
26
94
0
110
31
21
21
25
1.98
69815--69846
16
2.0
16
93
0
55
31
3
18
46
1.65
72133--72381
103
2.4
103
82
2
309
38
14
13
33
1.85
73503--73544
19
2.2
19
87
12
59
33
21
23
21
1.97

Tables:   1

The End!