genome.fa.s3589.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003589.1 Hibiscus syriacus cultivar Beakdansim tig00007570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119437

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7336--7399	26	2.5	26	94	0	110	31	21	21	25	1.98
13586--13617	16	2.0	16	93	0	55	31	3	18	46	1.65
15908--16175	106	2.5	105	85	1	367	38	14	14	33	1.86
17322--17368	20	2.3	20	89	7	69	38	19	23	19	1.93
17322--17378	20	2.9	19	84	7	60	35	21	21	22	1.96
18462--18502	17	2.6	16	85	11	50	36	9	0	53	1.34
19842--19887	23	2.0	23	83	8	58	28	4	6	60	1.40
20036--20066	3	10.7	3	93	6	55	32	0	0	67	0.91
20036--20062	14	1.9	14	100	0	54	33	0	0	66	0.92
20102--20174	2	36.5	2	100	0	146	49	0	0	50	1.00
30119--30178	7	8.7	7	96	1	104	75	0	15	10	1.05
30244--30290	8	6.4	7	79	15	51	80	2	17	0	0.80
30243--30296	15	3.9	13	82	17	65	79	1	18	0	0.82
30244--30290	22	2.1	23	92	4	78	80	2	17	0	0.80
31412--31599	99	1.9	99	86	2	270	35	21	18	23	1.95
33583--33659	2	38.5	2	100	0	154	49	0	0	50	1.00
34597--34829	118	2.0	119	97	0	441	45	12	11	30	1.78
35504--35828	38	8.8	38	79	14	308	45	2	5	45	1.42
35477--35719	73	3.3	72	77	13	219	45	4	6	43	1.49
35516--35828	37	8.5	36	80	11	300	45	2	5	46	1.39
35709--35777	31	2.2	31	87	7	104	42	0	5	52	1.25
35739--35847	41	2.6	42	84	11	127	44	1	3	49	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35739--35816	41	1.9	42	92	5	133	47	0	3	48	1.20
35854--35895	18	2.5	17	79	20	52	28	2	0	69	1.01
37299--37366	14	4.7	14	74	12	66	19	7	0	73	1.06
37643--37695	21	2.5	21	81	6	72	20	26	18	33	1.96
37725--37839	20	5.7	20	82	6	124	33	26	17	22	1.96
37723--37859	41	3.4	40	81	6	168	35	25	16	22	1.95
38026--38069	22	2.0	22	90	0	70	20	43	15	20	1.88
38331--38389	20	3.0	20	89	0	82	15	18	23	42	1.88
39706--39753	18	2.7	18	86	0	69	25	43	14	16	1.86
40276--40342	20	3.4	20	81	2	73	38	23	22	14	1.92
40331--40420	14	5.7	14	72	23	72	50	22	16	11	1.77
40315--40439	33	3.8	33	100	0	250	48	20	18	12	1.81
40315--40444	19	7.6	19	71	23	128	46	20	19	13	1.82
40470--40574	19	5.4	19	87	1	102	16	20	20	42	1.89
40522--40574	20	2.7	20	93	0	88	15	22	24	37	1.92
40950--41018	21	3.3	20	74	6	66	24	40	15	18	1.90
40940--41030	41	2.2	42	88	2	139	21	41	15	20	1.89
42617--42662	19	2.4	19	100	0	92	47	17	19	15	1.82
42701--42756	20	2.8	20	94	0	94	14	21	23	41	1.89
43090--43145	21	2.7	21	97	0	103	23	23	14	39	1.91
43156--43204	21	2.3	22	79	6	66	38	16	24	20	1.92
48072--48113	20	2.0	21	86	4	59	50	0	7	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59536--59576	22	2.0	20	85	9	55	21	26	21	29	1.99
59703--59786	44	1.9	44	87	4	125	50	5	3	40	1.44
60036--60088	28	1.9	28	84	3	72	43	16	15	24	1.87
60828--60855	6	4.7	6	100	0	56	53	0	0	46	1.00
60907--60936	2	15.0	2	100	0	60	50	0	0	50	1.00
64741--64794	20	2.7	20	83	11	83	29	31	12	25	1.93
64818--64929	20	5.2	20	73	17	91	42	21	16	19	1.89
65057--65107	22	2.3	22	93	0	84	23	43	11	21	1.85
67546--67668	42	2.9	42	83	4	140	21	37	20	20	1.95
67556--67668	21	5.4	21	71	4	84	21	37	22	19	1.95
69027--69130	52	2.1	51	82	8	126	32	0	17	49	1.53
69194--69261	20	3.4	20	84	8	102	42	22	17	17	1.89
69292--69365	34	2.2	34	88	9	107	18	21	20	39	1.93
69542--69628	39	2.2	39	97	0	165	17	14	20	47	1.83
70346--70395	25	2.0	25	84	0	64	46	18	8	28	1.77
70486--70547	20	3.1	20	85	0	97	33	24	20	20	1.97
70539--70644	34	3.1	34	90	0	167	20	25	17	35	1.95
73196--73245	24	2.1	24	88	0	73	38	18	20	24	1.93
74154--74204	19	2.7	19	96	0	93	29	7	23	39	1.83
74193--74243	20	2.5	20	83	0	66	21	13	23	41	1.89
74235--74259	13	1.9	13	100	0	50	32	12	32	24	1.91
74245--74288	21	2.1	21	86	0	61	47	18	18	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74303--74373	20	3.6	19	78	12	81	25	15	30	28	1.96
87840--87912	27	2.7	27	75	8	78	24	9	19	46	1.79
89598--89641	20	2.2	20	83	0	52	31	22	20	25	1.98
93509--93553	21	2.1	21	84	8	56	60	6	6	26	1.47
94376--94408	17	1.9	17	93	0	57	45	6	21	27	1.75
96962--96999	20	1.9	20	100	0	76	28	15	18	36	1.92
101120--101200	10	8.3	9	73	15	63	29	27	25	17	1.97
101163--101201	21	1.9	21	94	5	71	33	25	25	15	1.95
107642--107681	19	2.1	19	90	0	62	10	22	45	22	1.82
107678--107767	9	9.3	9	71	13	63	28	27	26	16	1.97
107720--107764	21	2.2	21	84	7	58	33	28	26	11	1.91
107729--107768	21	2.0	21	95	5	73	30	25	30	15	1.95
108760--108831	17	4.0	18	74	17	69	61	1	0	37	1.05
108758--108837	23	3.5	22	76	19	60	61	1	0	37	1.04
108749--108878	14	9.8	13	70	22	62	59	0	2	37	1.16
108919--108959	19	2.0	20	90	9	66	56	0	0	43	0.99
114770--114841	24	3.0	24	91	2	99	47	8	36	8	1.64
114786--114841	24	2.3	24	100	0	112	50	8	32	8	1.65
115013--115060	23	2.1	23	88	0	69	35	12	18	33	1.89
115800--115860	21	2.7	23	82	10	81	37	21	4	36	1.75
116262--116344	39	2.1	39	95	0	148	16	14	20	48	1.81
116600--116636	18	2.1	18	89	0	56	51	10	5	32	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117021--117071	25	2.0	25	92	0	84	39	19	7	33	1.81
117334--117385	23	2.3	22	90	6	77	44	19	1	34	1.62
117344--117406	23	2.7	23	90	0	90	38	19	6	36	1.77

Tables:   1

The End!