genome.fa.s359.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000359.1 Hibiscus syriacus cultivar Beakdansim tig00000655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52991

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5591--5634	18	2.4	18	96	0	79	18	6	25	50	1.71
13917--14046	69	1.9	66	92	4	206	7	31	6	53	1.56
15684--15818	60	2.2	60	83	10	186	37	5	22	34	1.77
16872--16982	30	3.8	30	88	3	147	39	9	9	40	1.72
22449--22508	29	2.1	29	83	0	75	65	8	13	13	1.48
24675--24774	25	4.0	25	100	0	200	28	16	20	36	1.93
29390--29489	25	4.0	25	100	0	200	28	16	20	36	1.93
29557--29596	3	13.3	3	89	10	64	70	0	0	30	0.88
29549--29592	22	2.0	22	91	8	72	68	2	0	29	1.02
29808--30036	40	5.5	40	76	10	185	24	17	33	24	1.97
29754--30069	40	7.4	42	73	14	149	25	18	31	25	1.98
30619--30661	14	3.0	14	86	6	59	41	4	20	32	1.73
30619--30661	15	2.9	15	89	3	61	41	4	20	32	1.73
31115--31312	67	3.0	67	87	2	229	45	11	13	29	1.79
31175--31296	37	3.5	36	73	15	130	44	10	13	31	1.77
31157--31312	67	2.3	67	93	2	260	45	10	12	30	1.77
31299--31403	52	2.0	53	90	3	167	36	17	13	33	1.88
31284--31598	141	2.2	140	94	2	549	41	16	11	30	1.83
31540--31663	29	4.5	25	77	16	88	49	14	8	27	1.73
31555--31656	29	3.7	29	85	6	133	48	15	7	28	1.73
31895--31998	36	3.0	35	81	4	129	34	11	20	33	1.88
31896--32025	35	3.8	32	78	12	109	33	13	20	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31966--32197	105	2.3	100	82	7	261	37	12	18	30	1.89
32661--32700	4	10.5	4	89	10	66	25	0	25	50	1.50
33849--33899	21	2.3	22	80	10	59	3	27	3	64	1.28
34537--34630	46	2.1	45	87	2	134	37	7	26	28	1.83
36842--36934	31	3.0	31	98	1	177	61	9	13	15	1.57
38829--38888	29	2.1	29	83	0	75	65	8	13	13	1.48
41047--41146	25	4.0	25	100	0	200	28	16	20	36	1.93
41214--41253	3	13.3	3	89	10	64	70	0	0	30	0.88
41206--41249	22	2.0	22	91	8	72	68	2	0	29	1.02
49481--49555	34	2.1	36	85	4	100	12	14	17	56	1.68
49568--49649	41	2.0	41	95	0	146	10	6	29	53	1.60
49571--49636	20	3.2	20	67	12	53	10	6	27	56	1.57

Tables:   1

The End!