Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003590.1 Hibiscus syriacus cultivar Beakdansim tig00007571_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87485
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:733 original size:31 final size:32
Alignment explanation
Indices: 685--754 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 32
675 AAAGATAAAT
685 TATTATTTAAATATAA-TT-TAAAATATCAAAA
1 TATT-TTTAAATATAATTTATAAAATATCAAAA
* * *
716 TATTTTTACAATTTAATTTATAAAATATTAAAT
1 TATTTTTA-AATATAATTTATAAAATATCAAAA
749 TATTTT
1 TATTTT
755 AATGATAACC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 4 0.12
31 10 0.30
32 2 0.06
33 17 0.52
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (32 bp):
TATTTTTAAATATAATTTATAAAATATCAAAA
Found at i:7912 original size:2 final size:2
Alignment explanation
Indices: 7905--7952 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
7895 TATAACAATC
7905 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7947 AT AT AT
1 AT AT AT
7953 TCTTCATAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12811 original size:75 final size:75
Alignment explanation
Indices: 12683--12876 Score: 232
Period size: 75 Copynumber: 2.6 Consensus size: 75
12673 TGTTGTTTAA
* * * * *
12683 TATTTTTCTAGACTTAATATTATGGTTTCAGTCTTAAGATTTAACACTTTAATATTAT-AGTTTG
1 TATTATTCTAGACTTAATATTGTGGTTTGAGTCTTGAGATTTGACACTTTAATATTATGA-TTT-
12747 A-TTATGGATTT
64 ATTTATGGATTT
* * * *
12758 TATTATTCTAGAGTTAATATTGTGGTTTGAATCTTGAGATTTGACATTTTAATATTGTGATTTAT
1 TATTATTCTAGACTTAATATTGTGGTTTGAGTCTTGAGATTTGACACTTTAATATTATGATTTAT
12823 TTATGGATTT
66 TTATGGATTT
* * * *
12833 TA-TGTTATAAACTTAATATTGTGGTTTGAGTCTTGATATTTGAC
1 TATTATTCTAGACTTAATATTGTGGTTTGAGTCTTGAGATTTGAC
12877 TTTATTTATA
Statistics
Matches: 102, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
74 37 0.36
75 64 0.63
76 1 0.01
ACGTcount: A:0.28, C:0.06, G:0.15, T:0.51
Consensus pattern (75 bp):
TATTATTCTAGACTTAATATTGTGGTTTGAGTCTTGAGATTTGACACTTTAATATTATGATTTAT
TTATGGATTT
Found at i:17970 original size:15 final size:15
Alignment explanation
Indices: 17950--17980 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
17940 CAAAAAATAG
17950 AATTTTTATATAAAT
1 AATTTTTATATAAAT
*
17965 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
17980 A
1 A
17981 TTTAGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTTTATATAAAT
Found at i:21844 original size:2 final size:2
Alignment explanation
Indices: 21837--21862 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
21827 TATTTAAAAT
21837 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
21863 ATTAACAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24916 original size:28 final size:28
Alignment explanation
Indices: 24876--24942 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
24866 GTATTGGAAG
24876 AAAGCTAGAATGCTTTTGGGATGGTTTT
1 AAAGCTAGAATGCTTTTGGGATGGTTTT
24904 AAAGCTAGAATGCTTTTGGGATGGTTTT
1 AAAGCTAGAATGCTTTTGGGATGGTTTT
*
24932 GAAGCTA-AATG
1 AAAGCTAGAATG
24943 AGCTAGGGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 4 0.11
28 34 0.89
ACGTcount: A:0.28, C:0.07, G:0.28, T:0.36
Consensus pattern (28 bp):
AAAGCTAGAATGCTTTTGGGATGGTTTT
Found at i:25754 original size:22 final size:20
Alignment explanation
Indices: 25729--25768 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
25719 GTCCCTTTGA
25729 TGTATCTCAAGATACTCTTTAC
1 TGTAT-TCAA-ATACTCTTTAC
*
25751 TGTATTCCAATACTCTTT
1 TGTATTCAAATACTCTTT
25769 GCCTGGATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 3 0.18
22 5 0.29
ACGTcount: A:0.25, C:0.23, G:0.07, T:0.45
Consensus pattern (20 bp):
TGTATTCAAATACTCTTTAC
Found at i:27983 original size:21 final size:21
Alignment explanation
Indices: 27959--28003 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
27949 TTTTGTTCGT
* *
27959 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
27980 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
28001 TTG
1 TTG
28004 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:31330 original size:30 final size:30
Alignment explanation
Indices: 31296--31368 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
31286 CCCGAAGGAC
31296 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
31326 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
* *
31356 CTGTCCATAGGTC
1 CTATCCAGAGGTC
31369 CCGAAGAACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:31392 original size:31 final size:31
Alignment explanation
Indices: 31354--31481 Score: 141
Period size: 31 Copynumber: 4.1 Consensus size: 31
31344 GATCCTCGGT
* *
31354 AACTGTCCATAGGTCCCGAAGAACCTAGGTA
1 AACTGTCCATATGTCCCGAAGAACATAGGTA
* * **
31385 AACTGTCCATATATTCCTTAGAACATAGGTA
1 AACTGTCCATATGTCCCGAAGAACATAGGTA
* *
31416 TACTGTCCATATGTCTCGAA-AGACATAGGTAA
1 AACTGTCCATATGTCCCGAAGA-ACATAGGT-A
* *
31448 AACTGTCCATATGTTCCGTAGAACATAGGTA
1 AACTGTCCATATGTCCCGAAGAACATAGGTA
31479 AAC
1 AAC
31482 CCTCGACTCT
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
30 1 0.01
31 51 0.65
32 25 0.32
33 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (31 bp):
AACTGTCCATATGTCCCGAAGAACATAGGTA
Found at i:31470 original size:63 final size:61
Alignment explanation
Indices: 31351--31479 Score: 179
Period size: 63 Copynumber: 2.1 Consensus size: 61
31341 AAAGATCCTC
* *
31351 GGTAACTGTCCATAGGTCCCGAAGAACCTAGGTAAACTGTCCATATATTCCTTAGAACATA
1 GGTAACTGTCCATAGGTCCCGAAGAACATAGGTAAACTGTCCATATATTCCGTAGAACATA
* * *
31412 GGTATACTGTCCATATGTCTCGAA-AGACATAGGTAAAACTGTCCATATGTTCCGTAGAACATA
1 GGTA-ACTGTCCATAGGTCCCGAAGA-ACATAGGT-AAACTGTCCATATATTCCGTAGAACATA
31475 GGTAA
1 GGTAA
31480 ACCCTCGACT
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
61 5 0.08
62 25 0.42
63 30 0.50
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (61 bp):
GGTAACTGTCCATAGGTCCCGAAGAACATAGGTAAACTGTCCATATATTCCGTAGAACATA
Found at i:32838 original size:21 final size:21
Alignment explanation
Indices: 32814--32858 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
32804 TTTTGTTCGT
* *
32814 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
32835 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
32856 TTG
1 TTG
32859 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:44914 original size:21 final size:21
Alignment explanation
Indices: 44874--44973 Score: 152
Period size: 21 Copynumber: 4.8 Consensus size: 21
44864 TACCAAGAGT
*
44874 GAAAGAA-AGAAAAGGA-GAA
1 GAAAGAAGAGAAAAAGAGGAA
44893 GAAAGAAGAGAAAAAGAGGAA
1 GAAAGAAGAGAAAAAGAGGAA
44914 GAAAGAAGAGAAAAAGAGGAA
1 GAAAGAAGAGAAAAAGAGGAA
44935 GAAAGAAGAG-AAAAGAGGAA
1 GAAAGAAGAGAAAAAGAGGAA
44955 GAAAGAAGAAGAAGAAAGA
1 GAAAGAAG-AGAA-AAAGA
44974 AAGTTAAAGT
Statistics
Matches: 75, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
19 7 0.09
20 26 0.35
21 36 0.48
22 1 0.01
23 5 0.07
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (21 bp):
GAAAGAAGAGAAAAAGAGGAA
Found at i:44949 original size:10 final size:9
Alignment explanation
Indices: 44875--44975 Score: 60
Period size: 10 Copynumber: 10.1 Consensus size: 9
44865 ACCAAGAGTG
44875 AAAGAAAGAA
1 AAAG-AAGAA
44885 AAGGAGAAGAA
1 AA--AGAAGAA
44896 AGAAG-AGAA
1 A-AAGAAGAA
*
44905 AAAGAGGAA
1 AAAGAAGAA
44914 GAAAGAAGAGAA
1 -AAAG-A-AGAA
*
44926 AAAGAGGAA
1 AAAGAAGAA
44935 GAAAGAAGAGA
1 -AAAGAAGA-A
*
44946 AAAGAGGAA
1 AAAGAAGAA
44955 GAAAGAAGAA
1 -AAAGAAGAA
*
44965 GAAGAAAGAA
1 AAAG-AAGAA
44975 A
1 A
44976 GTTAAAGTCA
Statistics
Matches: 72, Mismatches: 8, Indels: 22
0.71 0.08 0.22
Matches are distributed among these distances:
8 3 0.04
9 15 0.21
10 36 0.50
11 12 0.17
12 6 0.08
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (9 bp):
AAAGAAGAA
Found at i:44949 original size:41 final size:41
Alignment explanation
Indices: 44874--44973 Score: 150
Period size: 41 Copynumber: 2.4 Consensus size: 41
44864 TACCAAGAGT
*
44874 GAAAGAA-AGAAAAGGAGAAGAAAGAAGAGAAAAAGAGGAA
1 GAAAGAAGAGAAAAAGAGAAGAAAGAAGAGAAAAAGAGGAA
44914 GAAAGAAGAGAAAAAGAGGAAGAAAGAAGAG-AAAAGAGGAA
1 GAAAGAAGAGAAAAAGA-GAAGAAAGAAGAGAAAAAGAGGAA
44955 GAAAGAAGAAGAAGAAAGA
1 GAAAGAAG-AGAA-AAAGA
44974 AAGTTAAAGT
Statistics
Matches: 55, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
40 7 0.13
41 26 0.47
42 17 0.31
43 5 0.09
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (41 bp):
GAAAGAAGAGAAAAAGAGAAGAAAGAAGAGAAAAAGAGGAA
Found at i:48307 original size:20 final size:19
Alignment explanation
Indices: 48282--48420 Score: 81
Period size: 19 Copynumber: 7.7 Consensus size: 19
48272 TATTTGAATT
48282 TTTTATAATAATTAACTTGA
1 TTTTATAATAATTAA-TTGA
*
48302 TTTTATAATAATTTA-TGTA
1 TTTTATAATAATTAATTG-A
48321 TATTTAT-AT-A-T--TTGA
1 T-TTTATAATAATTAATTGA
48336 TTTTATAATAATTAACTTGA
1 TTTTATAATAATTAA-TTGA
* *
48356 -TTTAAAATAATTTA-TGTA
1 TTTTATAATAATTAATTG-A
*
48374 TATGTAT-AT-A-T--TTGA
1 T-TTTATAATAATTAATTGA
48389 TTTTATAATAATTAACTTGA
1 TTTTATAATAATTAA-TTGA
48409 -TTTATAATAATT
1 TTTTATAATAATT
48421 TATGTATAGT
Statistics
Matches: 94, Mismatches: 6, Indels: 39
0.68 0.04 0.28
Matches are distributed among these distances:
14 9 0.10
15 8 0.09
16 6 0.06
17 6 0.06
18 5 0.05
19 30 0.32
20 30 0.32
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (19 bp):
TTTTATAATAATTAATTGA
Found at i:48384 original size:53 final size:53
Alignment explanation
Indices: 48267--48454 Score: 274
Period size: 53 Copynumber: 3.5 Consensus size: 53
48257 TTTCATGTAC
48267 GTATATATTTGAATTTTTTATAATAATTAACTTGATTTTATAATAATTTATGTATAT
1 GTATATATTTG-A--TTTTATAATAATTAACTTGA-TTTATAATAATTTATGTATAT
* *
48324 TTATATATTTGATTTTATAATAATTAACTTGATTTAAAATAATTTATGTATAT
1 GTATATATTTGATTTTATAATAATTAACTTGATTTATAATAATTTATGTATAT
48377 GTATATATTTGATTTTATAATAATTAACTTGATTTATAATAATTTATGTATA-
1 GTATATATTTGATTTTATAATAATTAACTTGATTTATAATAATTTATGTATAT
48429 GTA-ATTAACTTT-ATTTTATAATAATT
1 GTATA-T-A-TTTGATTTTATAATAATT
48455 TATTTATTTT
Statistics
Matches: 124, Mismatches: 4, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
51 1 0.01
52 4 0.03
53 85 0.69
54 23 0.19
56 1 0.01
57 10 0.08
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.53
Consensus pattern (53 bp):
GTATATATTTGATTTTATAATAATTAACTTGATTTATAATAATTTATGTATAT
Found at i:48435 original size:33 final size:34
Alignment explanation
Indices: 48285--48457 Score: 131
Period size: 34 Copynumber: 5.0 Consensus size: 34
48275 TTGAATTTTT
48285 TATAATAATTAACTTGATTTTATAATAATTTATG
1 TATAATAATTAACTTGATTTTATAATAATTTATG
* * * *
48319 TATATTTA-TATATTTGATTTTATAATAATTAACTTG
1 TATAATAATTA-ACTTGATTTTATAATAATTTA--TG
* * * * *
48355 ATTTAA-AA-TAA-TTTATGTATATGTATATATTTGATTT
1 -TATAATAATTAACTTGAT-TTTAT-AATA-ATTT-A-TG
48392 TATAATAATTAACTTGA-TTTATAATAATTTATG
1 TATAATAATTAACTTGATTTTATAATAATTTATG
* *
48425 TATAGTAATTAACTTTATTTTATAATAATTTAT
1 TATAATAATTAACTTGATTTTATAATAATTTAT
48458 TTATTTTTTA
Statistics
Matches: 108, Mismatches: 19, Indels: 24
0.72 0.13 0.16
Matches are distributed among these distances:
33 18 0.17
34 45 0.42
35 9 0.08
36 15 0.14
37 14 0.13
38 4 0.04
39 3 0.03
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (34 bp):
TATAATAATTAACTTGATTTTATAATAATTTATG
Found at i:51879 original size:20 final size:22
Alignment explanation
Indices: 51834--51891 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
51824 GCATGGGTAG
51834 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTT-AAGAA
51858 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
*
51878 TGTATCGATGCACT
1 TGCATCGATGCACT
51892 TCAAGGAGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 17 0.52
22 1 0.03
23 2 0.06
24 13 0.39
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:54080 original size:17 final size:17
Alignment explanation
Indices: 54048--54095 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
54038 GAATTCAATT
*
54048 TAAAGATTATATTTAATA
1 TAAAAATTA-ATTTAATA
* *
54066 TAAACATTAATTTAATC
1 TAAAAATTAATTTAATA
54083 TAAAAATT-ATTTA
1 TAAAAATTAATTTA
54096 CTAATTAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 5 0.19
17 14 0.52
18 8 0.30
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (17 bp):
TAAAAATTAATTTAATA
Found at i:54437 original size:4 final size:4
Alignment explanation
Indices: 54430--54499 Score: 56
Period size: 4 Copynumber: 16.8 Consensus size: 4
54420 TTTCTTCTTC
*
54430 TTCT TTCT TTCT TTCT CT-T TTCTT TTCT TTCT TCCTCT TT-T TTC- TTCT
1 TTCT TTCT TTCT TTCT TTCT TTC-T TTCT TTCT T--TCT TTCT TTCT TTCT
54478 TTCT TCTCCT CTTCT TTCT TTC
1 TTCT T-T-CT -TTCT TTCT TTC
54500 ACTCTGGGTG
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
3 8 0.15
4 32 0.58
5 7 0.13
6 7 0.13
7 1 0.02
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (4 bp):
TTCT
Found at i:54448 original size:10 final size:10
Alignment explanation
Indices: 54435--54496 Score: 58
Period size: 10 Copynumber: 6.1 Consensus size: 10
54425 TCTTCTTCTT
54435 TCTTTCTTTC
1 TCTTTCTTTC
54445 TCTTTTCTTT-
1 TC-TTTCTTTC
*
54455 TCTTTCTTCC
1 TCTTTCTTTC
54465 TCTTT-TTTC
1 TCTTTCTTTC
54474 TTCTTTC-TTC
1 -TCTTTCTTTC
54484 TCCTCTTCTTTC
1 T-CT-TTCTTTC
54496 T
1 T
54497 TTCACTCTGG
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
9 10 0.23
10 19 0.44
11 10 0.23
12 4 0.09
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (10 bp):
TCTTTCTTTC
Found at i:54456 original size:20 final size:19
Alignment explanation
Indices: 54420--54499 Score: 81
Period size: 20 Copynumber: 4.0 Consensus size: 19
54410 TTAACTTTTT
54420 TTTCTTCTTCTTCTTTCTTTC
1 TTTC-TCTT-TTCTTTCTTTC
54441 TTTCTCTTTTCTTTTCTTTC
1 TTTCTCTTTTC-TTTCTTTC
* *
54461 TTCCTCTTTTTTCTTCTTTC
1 TTTCTCTTTTCT-TTCTTTC
*
54481 -TTCTCCTCTTCTTTCTTTC
1 TTTCT-CTTTTCTTTCTTTC
54500 ACTCTGGGTG
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
19 14 0.27
20 33 0.65
21 4 0.08
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTCTCTTTTCTTTCTTTC
Found at i:59270 original size:16 final size:16
Alignment explanation
Indices: 59249--59280 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
59239 ATGTTCCAAT
59249 TAATGAAATATGTTGA
1 TAATGAAATATGTTGA
*
59265 TAATGAAGTATGTTGA
1 TAATGAAATATGTTGA
59281 GTCAATCGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (16 bp):
TAATGAAATATGTTGA
Found at i:59530 original size:20 final size:20
Alignment explanation
Indices: 59505--59549 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
59495 TCTTAGGGCA
*
59505 CATTTAGGTTCATATAGATG
1 CATTTAGGATCATATAGATG
* *
59525 CATTTAGGATCATGTAGTTG
1 CATTTAGGATCATATAGATG
59545 CATTT
1 CATTT
59550 GGTGGATTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.42
Consensus pattern (20 bp):
CATTTAGGATCATATAGATG
Found at i:67717 original size:29 final size:32
Alignment explanation
Indices: 67659--67717 Score: 88
Period size: 29 Copynumber: 1.9 Consensus size: 32
67649 GAAGAGGGGA
67659 GTATCAATACTCCATATAGAGTATCGATACCC
1 GTATCAATACTCCATATAGAGTATCGATACCC
*
67691 GTATCGATACT-CATA-A-AGTATCGATAC
1 GTATCAATACTCCATATAGAGTATCGATAC
67718 GAAAATAGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 11 0.42
30 1 0.04
31 4 0.15
32 10 0.38
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.29
Consensus pattern (32 bp):
GTATCAATACTCCATATAGAGTATCGATACCC
Found at i:70342 original size:13 final size:13
Alignment explanation
Indices: 70324--70349 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70314 TTTTTTATTG
70324 TAATTGTATTGAA
1 TAATTGTATTGAA
70337 TAATTGTATTGAA
1 TAATTGTATTGAA
70350 ACAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TAATTGTATTGAA
Found at i:72488 original size:18 final size:17
Alignment explanation
Indices: 72467--72509 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
72457 AAATTTTCAT
72467 ATATTTTCTATATAAATA
1 ATATTTTCTA-ATAAATA
* *
72485 ATATATTTTTAATTAATA
1 ATAT-TTTCTAATAAATA
72503 ATATTTT
1 ATATTTT
72510 TATTTTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 14 0.64
19 5 0.23
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
ATATTTTCTAATAAATA
Found at i:73082 original size:29 final size:31
Alignment explanation
Indices: 73049--73131 Score: 134
Period size: 29 Copynumber: 2.7 Consensus size: 31
73039 GTGAAGTCGT
*
73049 AGGTCGCCATGCACTCCGGGTGACCAA-G-G
1 AGGTCGCCATGCACTCCGGGCGACCAAGGAG
73078 AGGTCGCCATGCACTCCGGGCGACCAAGGAG
1 AGGTCGCCATGCACTCCGGGCGACCAAGGAG
*
73109 AGGTCGCCATGCACTCAGGGCGA
1 AGGTCGCCATGCACTCCGGGCGA
73132 GCTATGCATG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
29 26 0.52
30 1 0.02
31 23 0.46
ACGTcount: A:0.22, C:0.31, G:0.35, T:0.12
Consensus pattern (31 bp):
AGGTCGCCATGCACTCCGGGCGACCAAGGAG
Found at i:73693 original size:21 final size:21
Alignment explanation
Indices: 73668--73711 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
73658 AATTTAGTTA
73668 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTGTTAGTATAAATT
* *
73689 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTATAAATT
73710 AT
1 AT
73712 ATTATATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAGTTTGTTAGTATAAATT
Found at i:73721 original size:28 final size:30
Alignment explanation
Indices: 73688--73750 Score: 112
Period size: 28 Copynumber: 2.2 Consensus size: 30
73678 TAGTATAAAT
73688 TATTAGTTTGTTAGTTTAAG-T-TATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
73716 TATTAGTTTGTTAGTTTAAGTTATATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
73746 TATTA
1 TATTA
73751 TATAAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 20 0.61
29 1 0.03
30 12 0.36
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (30 bp):
TATTAGTTTGTTAGTTTAAGTTATATATTA
Found at i:74618 original size:15 final size:15
Alignment explanation
Indices: 74548--74623 Score: 70
Period size: 15 Copynumber: 5.3 Consensus size: 15
74538 AGTAATCATG
*
74548 ATTAAATCATATTATT
1 ATTAAATCAT-TAATT
*
74564 ATTAAATCATTAAAT
1 ATTAAATCATTAATT
* *
74579 ATCAAATCATT-A-G
1 ATTAAATCATTAATT
*
74592 ATT-AAT-AATAATT
1 ATTAAATCATTAATT
74605 ATTAAATCATTAATT
1 ATTAAATCATTAATT
74620 ATTA
1 ATTA
74624 TTAATATTAG
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
11 2 0.04
12 4 0.08
13 5 0.10
14 4 0.08
15 23 0.48
16 10 0.21
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.43
Consensus pattern (15 bp):
ATTAAATCATTAATT
Found at i:77627 original size:25 final size:25
Alignment explanation
Indices: 77598--77645 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
77588 TGATATAACT
*
77598 TGATTTAGTAATG-ATTTGATAATCA
1 TGATTTAATAATGAATTT-ATAATCA
77623 TGATTTAATAATGAATTTATAAT
1 TGATTTAATAATGAATTTATAAT
77646 TAAAATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (25 bp):
TGATTTAATAATGAATTTATAATCA
Found at i:77678 original size:46 final size:46
Alignment explanation
Indices: 77628--77849 Score: 231
Period size: 49 Copynumber: 4.7 Consensus size: 46
77618 AATCATGATT
* * *
77628 TAATAATGAATTTATAATTAAAATTATAATTATTTAGTAA-GATTAG
1 TAATAATGAAATTATTATTAATATT-TAATTATTTAGTAATGATTAG
* *
77674 TAATAATAAAATTATTATTAATATTTAATGATTTGTTAGTAATGATTAG
1 TAATAATGAAATTATTATTAATATTTAAT--TAT-TTAGTAATGATTAG
*
77723 TAATAATGAAATTATTATTAATATTTAATGATTTAGTAGTAATGATTAG
1 TAATAATGAAATTATTATTAATATTTAATTA-TT--TAGTAATGATTAG
*
77772 TAAT-A--AAA--ATTATTAATATTTAATGATTTGGTAGTAATGATTAG
1 TAATAATGAAATTATTATTAATATTTAATTA-TT--TAGTAATGATTAG
* *
77816 TAATAATGAAATTATTTTTAATATTTAATGATTT
1 TAATAATGAAATTATTATTAATATTTAATTATTT
77850 GATAGTAATG
Statistics
Matches: 154, Mismatches: 10, Indels: 24
0.82 0.05 0.13
Matches are distributed among these distances:
44 39 0.25
45 5 0.03
46 25 0.16
47 6 0.04
48 11 0.07
49 68 0.44
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (46 bp):
TAATAATGAAATTATTATTAATATTTAATTATTTAGTAATGATTAG
Found at i:77786 original size:93 final size:94
Alignment explanation
Indices: 77606--77869 Score: 333
Period size: 93 Copynumber: 2.8 Consensus size: 94
77596 CTTGATTTAG
* * * * * *
77606 TAATGATTTGATAATCATGATT--TAATAATGAATTTATAATTAAAATTATAATTATTTAGTA--
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT-TAATGATTTAGTAGT
* *
77667 AGATTAGTAATAATAAAATTATTATTAATATT
65 A-ATGATTAATAATAAAA-TATTATTAATATT
*
77699 TAATGATTTGTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAGTAGTA
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAGTAGTA
*
77764 ATGATTAGTAATAAAA-ATTATTAATATT
66 ATGATTAATAATAAAATATTATTAATATT
* *
77792 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTTTTAATATTTAATGATTT-GATAGT
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAG-TAGT
77856 AATGATTTAATAAT
65 AATGA-TTAATAAT
77870 TAGTAATAAT
Statistics
Matches: 152, Mismatches: 13, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
92 1 0.01
93 96 0.63
94 19 0.12
95 35 0.23
96 1 0.01
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.45
Consensus pattern (94 bp):
TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAGTAGTA
ATGATTAATAATAAAATATTATTAATATT
Found at i:78130 original size:16 final size:17
Alignment explanation
Indices: 78097--78144 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
78087 AATCATTCTA
*
78097 ATAATGATTT-AAATATT
1 ATAATGATTTGATAT-TT
78114 -TAATGATTTGATGATTT
1 ATAATGATTTGAT-ATTT
78131 ATAATGATTTGATA
1 ATAATGATTTGATA
78145 ATAATCATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 9 0.33
17 4 0.15
18 14 0.52
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (17 bp):
ATAATGATTTGATATTT
Found at i:78160 original size:26 final size:24
Alignment explanation
Indices: 77990--78415 Score: 227
Period size: 26 Copynumber: 17.3 Consensus size: 24
77980 TATTATGATT
* * *
77990 TAATAATGATTTAGTAATAATCGTTA
1 TAATAATCATTTAATAATGAT--TTA
*
78016 TAATAATGATTTAATAATGATTTTAA
1 TAATAATCATTTAATAATGA-TTT-A
* * * *
78042 TATTTAATGATTTGATAATAATCATTA
1 TA-ATAATCATTTAATAATGAT--TTA
* * * *
78069 TAATAATGATTTAGTAATAATCATTC
1 TAATAATCATTTAATAATGAT--TTA
*
78095 TAATAATGATTT-A-AAT-ATTTAA
1 TAATAATCATTTAATAATGATTT-A
* * *
78117 TGATTTGATGATTT-ATAATGATTTGA
1 T-A-ATAATCATTTAATAATGATTT-A
78143 TAATAATCATTATAATAATGATTTA
1 TAATAATCATT-TAATAATGATTTA
*
78168 GTAATAATCATTCTAAGAATGATTTAA
1 -TAATAATCATT-TAATAATGATTT-A
* * * *
78195 TAATAAT--TTTAATATTTAATGA
1 TAATAATCATTTAATAATGATTTA
* * * *
78217 T-TTGATGATTTAGTAATGATTTGA
1 TAATAATCATTTAATAATGATTT-A
78241 TAATAATCATTATAATAATGATTTA
1 TAATAATCATT-TAATAATGATTTA
78266 GTAATAATCATTCTAATAATGATTTAA
1 -TAATAATCATT-TAATAATGATTT-A
*
78293 TAATAATGA--TAATAATGATTTAA
1 TAATAATCATTTAATAATGATTT-A
78316 TAATAATCATTATAATAATGATTTAA
1 TAATAATCATT-TAATAATGATTT-A
* *
78342 TAGTAATGATTTAATAATGATTTA
1 TAATAATCATTTAATAATGATTTA
*
78366 GTAATGAT--TTTAATAATGA-TT-
1 -TAATAATCATTTAATAATGATTTA
*
78387 TAAT-A-CATTTAATAATTA-TTA
1 TAATAATCATTTAATAATGATTTA
78408 CTAATAAT
1 -TAATAAT
78416 TATGGAATAA
Statistics
Matches: 326, Mismatches: 43, Indels: 64
0.75 0.10 0.15
Matches are distributed among these distances:
19 1 0.00
20 16 0.05
21 5 0.02
22 9 0.03
23 53 0.16
24 23 0.07
25 32 0.10
26 164 0.50
27 21 0.06
28 2 0.01
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.45
Consensus pattern (24 bp):
TAATAATCATTTAATAATGATTTA
Found at i:78247 original size:98 final size:97
Alignment explanation
Indices: 78083--78391 Score: 396
Period size: 98 Copynumber: 3.2 Consensus size: 97
78073 AATGATTTAG
* * *
78083 TAATAATCATTCTAATAATGATTTAAATATTTAATGATTTGATGATTTATAATGATTTGATAATA
1 TAATAATGATT-TAATAATAATTTTAATATTTAATGATTTGATGATTTATAATGATTTGATAATA
78148 ATCATTATAATAATGATTTAGTAATAATCATTC
65 ATCATTATAATAATGATTTAGTAATAATCATTC
*
78181 TAAGAATGATTTAATAATAATTTTAATATTTAATGATTTGATGATTTAGTAATGATTTGATAATA
1 TAATAATGATTTAATAATAATTTTAATATTTAATGATTTGATGATTTA-TAATGATTTGATAATA
78246 ATCATTATAATAATGATTTAGTAATAATCATTC
65 ATCATTATAATAATGATTTAGTAATAATCATTC
* * * * *
78279 TAATAATGATTTAATAATAATGATAATAATGATTTAAT-A-ATAATCATTATAATAATGATTTAA
1 TAATAATGATTTAATAATAAT--T-TTAAT-ATTTAATGATTTGATGATT-T-ATAATGATTTGA
* * *
78342 TAGTAATGATT-TAATAATGATTTAGTAATGAT--TT-
60 TAATAATCATTATAATAATGATTTAGTAATAATCATTC
78376 TAATAATGATTTAATA
1 TAATAATGATTTAATA
78392 CATTTAATAA
Statistics
Matches: 191, Mismatches: 13, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
97 51 0.27
98 80 0.42
100 27 0.14
101 25 0.13
102 8 0.04
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (97 bp):
TAATAATGATTTAATAATAATTTTAATATTTAATGATTTGATGATTTATAATGATTTGATAATAA
TCATTATAATAATGATTTAGTAATAATCATTC
Found at i:78378 original size:86 final size:86
Alignment explanation
Indices: 77968--78402 Score: 381
Period size: 86 Copynumber: 5.2 Consensus size: 86
77958 GATGTTTTAG
* * * * *
77968 TAATGATTTTAAT-ATTATGATT-TAATAATGATTTAGTAATAATCGTTATAATAATGATTTAAT
1 TAATGA-TTTAATAATAATCATTATAATAATGATTTAATAATAATCATTCTAATAATGATTTAAT
78031 AATGATTT--TA-AT-AT--T-
65 AATGATTTAATATATAATGATA
* *
78046 TAATGATTTGATAATAATCATTATAATAATGATTTAGTAATAATCATTCTAATAATGATTT-A-A
1 TAATGATTTAATAATAATCATTATAATAATGATTTAATAATAATCATTCTAATAATGATTTAATA
* *
78109 AT-ATTTAATGATTTGATGATTTA
66 ATGATTTAAT-ATATAATGA--TA
* * *
78132 TAATGATTTGATAATAATCATTATAATAATGATTTAGTAATAATCATTCTAAGAATGATTTAATA
1 TAATGATTTAATAATAATCATTATAATAATGATTTAATAATAATCATTCTAATAATGATTTAATA
* * *
78197 ATAATTTTAATATTTAATGATT
66 ATGA-TTTAATATATAATGATA
* * * * * * *
78219 TGATGATTTAGTAATGAT--TTGATAATAATCA-TT-ATAATAATGATTTAGTAATAATCATTCT
1 TAATGATTTAATAATAATCATT-ATAATAATGATTTAATAATAATCA-TT-CTAATAATGATT-T
78280 AATAATGATTTAATA-ATAATGATAA
62 AATAATGATTTAATATATAATGAT-A
* * *
78305 TAATGATTTAATAATAATCATTATAATAATGATTTAATAGTAATGATT-TAATAATGATTTAGTA
1 TAATGATTTAATAATAATCATTATAATAATGATTTAATAATAATCATTCTAATAATGATTTAATA
*
78369 ATGATTT--TA-ATAATGATT
66 ATGATTTAATATATAATGATA
*
78387 TAATACATTTAATAAT
1 TAAT-GATTTAATAAT
78403 TATTACTAAT
Statistics
Matches: 300, Mismatches: 31, Indels: 47
0.79 0.08 0.12
Matches are distributed among these distances:
76 4 0.01
77 8 0.03
78 15 0.05
79 37 0.12
80 1 0.00
81 2 0.01
82 4 0.01
83 20 0.07
84 8 0.03
85 25 0.08
86 110 0.37
87 33 0.11
88 9 0.03
89 18 0.06
90 6 0.02
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (86 bp):
TAATGATTTAATAATAATCATTATAATAATGATTTAATAATAATCATTCTAATAATGATTTAATA
ATGATTTAATATATAATGATA
Found at i:78565 original size:59 final size:56
Alignment explanation
Indices: 78486--78606 Score: 161
Period size: 59 Copynumber: 2.1 Consensus size: 56
78476 TCGAATTTAT
* * * *
78486 TAATGATTTTTAAATATTTAATGATTTGATACTAATGATTTAGTAATTATTATTAA
1 TAATGATTTTTAAATATTTAATGATTTGATACTAATGAATTACTAATGATTACTAA
* *
78542 TAATGATTTATTACTAATATTTAATTATTTGATACTAATGAATTACTAATGATTACTAG
1 TAATGATTT-TTA--AATATTTAATGATTTGATACTAATGAATTACTAATGATTACTAA
78601 TAATGA
1 TAATGA
78607 AATTATAATA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 9 0.16
57 3 0.05
59 44 0.79
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (56 bp):
TAATGATTTTTAAATATTTAATGATTTGATACTAATGAATTACTAATGATTACTAA
Found at i:78619 original size:59 final size:59
Alignment explanation
Indices: 78498--78619 Score: 156
Period size: 59 Copynumber: 2.1 Consensus size: 59
78488 ATGATTTTTA
* * * * * *
78498 AATATTTAATGATTTGATACTAATGATTTAGTAATTATTATTAATAATGATTTATTACT
1 AATATTTAATGATTTGATACTAATGAATTACTAATGATTACTAATAATGAATTATTAAT
* *
78557 AATATTTAATTATTTGATACTAATGAATTACTAATGATTACTAGTAATGAAATTA-TAAT
1 AATATTTAATGATTTGATACTAATGAATTACTAATGATTACTAATAATG-AATTATTAAT
78616 AATA
1 AATA
78620 ATTTGATACT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
59 50 0.93
60 4 0.07
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (59 bp):
AATATTTAATGATTTGATACTAATGAATTACTAATGATTACTAATAATGAATTATTAAT
Found at i:83780 original size:23 final size:24
Alignment explanation
Indices: 83740--83785 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
83730 TTGTTTATAT
**
83740 TTTATATTTTAATTTAAATAAATA
1 TTTATATTTTAAAATAAATAAATA
83764 TTTAT-TTTTAAAATAAATAAAT
1 TTTATATTTTAAAATAAATAAAT
83786 CCTCGAACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTATATTTTAAAATAAATAAATA
Found at i:85324 original size:12 final size:13
Alignment explanation
Indices: 85288--85333 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 13
85278 AAATGGGTTT
*
85288 AATATTTTTATTTA
1 AATATTATT-TTTA
85302 AACTA-TATTTTTA
1 AA-TATTATTTTTA
85315 AA-ATTATTTTTA
1 AATATTATTTTTA
85327 AATATTA
1 AATATTA
85334 ATATAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
11 1 0.04
12 10 0.36
13 10 0.36
14 5 0.18
15 2 0.07
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (13 bp):
AATATTATTTTTA
Found at i:85417 original size:12 final size:14
Alignment explanation
Indices: 85391--85422 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
85381 TTGATTTTAA
85391 TATTTTTATTAAAT
1 TATTTTTATTAAAT
85405 TATTTTTA-T-AAT
1 TATTTTTATTAAAT
85417 TATTTT
1 TATTTT
85423 AAATAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 1 0.06
14 8 0.44
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TATTTTTATTAAAT
Done.