genome.fa.s3591.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003591.1 Hibiscus syriacus cultivar Beakdansim tig00007576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85562

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565--617	21	2.5	21	84	0	70	20	26	18	33	1.96
592--683	41	2.2	41	84	0	130	34	19	19	26	1.96
607--678	20	3.5	20	88	3	117	38	19	22	19	1.93
1196--1266	20	3.5	20	84	3	90	50	19	16	12	1.77
1239--1330	33	2.8	33	88	5	132	46	21	20	10	1.81
1326--1403	19	4.1	19	81	6	95	15	20	19	44	1.86
3080--3550	94	5.1	94	92	2	738	21	11	19	47	1.81
3646--3703	19	3.0	20	84	5	91	50	18	22	8	1.74
3666--3763	33	2.9	33	86	1	142	46	25	20	7	1.75
3732--3769	20	1.9	20	100	0	76	50	28	15	5	1.66
3779--3901	19	7.0	18	69	21	91	9	21	20	48	1.77
3837--3898	20	3.2	20	86	4	99	9	22	17	50	1.75
3778--3904	33	3.7	33	87	6	164	9	22	20	48	1.78
3933--3980	25	1.9	25	95	0	87	29	0	33	37	1.58
4301--4451	19	8.7	19	65	21	80	11	23	19	45	1.83
4305--4431	33	3.8	33	93	0	218	11	23	18	46	1.82
4404--4458	20	2.8	19	83	2	65	18	21	21	38	1.94
6965--7018	24	2.2	24	96	0	99	42	20	16	20	1.89
7859--7989	21	6.4	20	75	9	88	31	19	20	29	1.97
7859--7945	20	4.3	20	82	5	88	27	20	19	32	1.97
7859--7989	41	3.2	41	79	3	140	31	19	20	29	1.97
8460--8896	215	2.0	213	89	3	673	37	27	11	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14386--14429	14	2.9	15	93	6	72	47	13	22	15	1.81
16655--16753	51	1.9	51	95	0	180	36	11	21	31	1.88
17842--18577	370	2.0	369	99	0	1445	28	17	19	34	1.95
25518--25542	2	12.5	2	100	0	50	52	0	0	48	1.00
30093--30123	16	2.0	15	93	6	53	12	25	41	19	1.87
30271--30330	4	15.0	4	75	6	59	68	0	6	25	1.14
30265--30330	25	2.7	24	83	4	78	66	1	7	24	1.26
30373--30530	33	4.8	33	90	4	228	49	7	0	42	1.36
30337--30605	100	2.7	100	81	8	296	47	8	2	42	1.45
30535--30694	36	4.5	35	73	9	128	46	7	4	41	1.52
31314--32640	85	16.0	81	77	8	878	25	20	24	30	1.99
31351--32642	249	5.2	249	93	1	2004	25	20	24	30	1.99
36051--36095	19	2.4	19	92	3	74	66	8	13	11	1.44
39023--39053	16	2.0	15	93	6	53	12	25	41	19	1.87
39201--39260	4	15.0	4	75	6	59	68	0	6	25	1.14
39195--39260	25	2.7	24	83	4	78	66	1	7	24	1.26
39274--39339	21	3.4	19	73	26	59	51	7	0	40	1.30
39264--39469	35	5.8	35	87	7	272	50	7	0	41	1.35
39264--39547	109	2.7	106	81	8	319	47	7	2	42	1.44
39311--39634	35	9.2	35	76	9	141	46	7	2	42	1.47
40773--40816	19	2.3	18	82	17	54	54	0	4	40	1.21
43819--43843	7	3.6	7	100	0	50	16	16	16	52	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46879--46912	17	1.9	18	88	5	52	52	32	2	11	1.53
47913--47964	16	3.3	16	69	15	54	26	7	11	53	1.63
47910--47984	31	2.4	31	100	0	150	28	8	9	54	1.60
48073--48139	31	2.2	30	86	5	98	40	14	2	41	1.62
48273--48298	8	3.2	8	100	0	52	84	0	0	15	0.62
55446--55516	37	1.9	37	91	0	115	12	11	18	57	1.64
63129--63159	14	2.2	14	100	0	62	58	9	12	19	1.62
63222--63278	27	2.1	27	100	0	114	26	31	8	33	1.87
64014--64044	15	2.1	15	100	0	62	12	41	19	25	1.87
68556--68605	22	2.3	23	79	10	59	46	2	6	46	1.39
73114--73152	19	1.9	19	85	10	51	5	28	5	61	1.39
76897--76940	23	1.9	23	90	9	72	20	2	27	50	1.60
79356--79404	24	2.0	24	84	0	62	30	6	18	44	1.74
79568--79779	82	2.6	82	87	3	291	21	22	23	32	1.98
80668--80740	10	7.7	9	79	11	83	16	24	30	28	1.96
80667--80749	19	4.3	19	90	7	123	18	25	30	26	1.98
80754--80790	17	2.2	17	95	0	65	18	45	21	13	1.84
80780--80822	7	6.4	7	86	10	63	18	30	27	23	1.98
80780--80816	13	2.8	13	100	0	74	16	32	29	21	1.95
80780--80822	20	2.2	20	87	8	61	18	30	27	23	1.98

Tables:   1

The End!