genome.fa.s3592.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003592.1 Hibiscus syriacus cultivar Beakdansim tig00007583_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102361

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7544--7657	48	2.4	45	85	8	149	20	34	13	32	1.91
24639--24687	22	2.1	24	92	7	84	14	8	28	48	1.72
25671--25708	3	13.0	3	88	5	60	34	0	0	65	0.93
27456--27490	16	2.2	16	89	0	52	48	14	0	37	1.44
27698--28127	110	3.9	107	79	10	383	42	3	6	48	1.43
27698--28127	111	3.9	107	78	10	397	42	3	6	48	1.43
28155--28205	3	16.7	3	80	11	59	25	1	0	72	0.95
28135--28206	25	3.0	23	78	15	74	25	1	0	73	0.91
28151--28200	16	3.1	16	88	5	75	26	2	0	72	0.96
28134--28190	6	9.3	6	77	11	53	24	0	0	75	0.80
28137--28215	28	2.7	27	80	18	88	22	1	1	74	0.96
28634--28672	19	2.0	20	85	5	53	61	28	2	7	1.37
29706--29875	22	7.5	22	69	7	115	39	0	8	51	1.33
29674--29830	15	9.5	15	70	22	93	42	0	5	51	1.25
29674--29787	47	2.3	52	86	7	157	44	0	5	50	1.24
29706--29885	69	2.6	69	98	0	344	38	0	8	52	1.32
29741--30315	54	10.8	54	76	14	554	34	0	12	52	1.39
29855--30004	80	1.9	80	97	0	282	32	0	14	53	1.42
29934--30343	32	13.6	32	72	22	275	33	0	14	52	1.41
29810--30315	134	3.7	134	85	9	704	33	0	13	52	1.40
29967--30009	22	2.0	22	100	0	86	34	0	13	51	1.42
30021--30063	22	2.0	22	100	0	86	34	0	13	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29855--30394	220	2.4	220	96	1	1008	32	0	14	52	1.41
30187--30283	22	4.0	22	71	23	86	34	0	14	51	1.43
30360--30420	26	2.4	24	97	0	77	24	0	19	55	1.43
30449--30508	31	1.9	31	93	0	102	43	10	6	40	1.64
30749--30803	21	2.5	23	80	16	64	16	7	1	74	1.12
30832--30860	2	14.5	2	100	0	58	48	0	0	51	1.00
30902--30986	25	3.4	25	75	19	63	10	11	2	75	1.14
30928--31004	33	2.3	34	80	8	86	11	11	2	74	1.18
30962--31003	16	2.5	17	80	7	59	9	9	4	76	1.15
34723--34977	95	2.7	95	86	3	331	33	16	17	32	1.93
36039--37094	84	13.0	84	82	5	940	32	23	19	24	1.97
36513--37094	80	7.2	80	86	1	714	31	23	19	24	1.98
37519--37812	39	7.7	39	76	14	274	42	3	6	47	1.45
37724--37750	12	2.2	12	100	0	54	37	7	7	48	1.59
37524--37849	37	8.7	35	77	15	271	42	2	6	47	1.43
37791--37869	37	2.1	37	83	9	97	43	1	2	53	1.22
38350--38388	19	2.0	20	85	5	53	61	28	2	7	1.37
39356--39429	26	2.8	25	79	8	67	10	14	1	72	1.17
39356--39429	27	2.7	27	81	4	78	10	14	1	72	1.17
39400--39448	23	2.1	23	81	7	55	14	16	0	69	1.19
44507--44558	25	2.0	26	85	3	70	48	3	0	48	1.20
45696--45739	13	3.4	13	83	0	52	59	9	0	31	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46357--46410	17	3.3	17	76	10	58	33	3	12	50	1.59
57700--57761	19	3.2	19	80	13	65	61	3	0	35	1.12
59161--59192	16	1.9	17	93	6	57	75	0	3	21	0.95
59158--59213	14	3.9	14	75	11	60	73	1	1	23	1.03
59229--59261	13	2.4	14	90	10	50	78	0	0	21	0.75
59231--59269	7	5.3	7	84	9	51	79	0	0	20	0.73
60981--62702	84	20.9	83	82	4	1927	24	18	23	33	1.97
60981--62702	83	20.9	83	84	2	2003	24	18	23	33	1.97
60981--62702	167	10.4	165	85	2	2011	24	18	23	33	1.97
69315--69354	21	1.9	21	89	0	62	25	40	25	10	1.86
72110--72166	21	2.7	21	100	0	114	28	26	28	17	1.98
73480--73740	95	2.7	95	83	5	310	32	18	16	32	1.93
79253--79282	3	9.7	3	92	7	51	66	0	0	33	0.92
81807--81911	51	2.0	53	82	10	128	34	16	5	43	1.71
82109--82298	60	3.2	59	77	8	161	37	4	26	31	1.77
84122--84174	22	2.5	21	73	11	54	49	5	0	45	1.26
84219--84292	34	2.2	34	92	0	130	41	0	9	48	1.35
84762--84813	23	2.3	23	89	0	77	40	7	19	32	1.80
84894--85608	199	3.6	197	81	6	804	31	14	14	39	1.87
89727--91097	200	6.8	199	82	2	1614	31	16	13	38	1.87
89727--91097	402	3.4	401	90	2	2049	31	16	13	38	1.87
89728--91097	602	2.3	599	83	3	1696	31	16	13	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92602--92651	18	2.8	18	84	0	55	28	28	2	42	1.67
92618--92653	18	2.0	18	94	0	63	19	27	5	47	1.72
94670--94710	21	2.0	21	90	0	64	43	12	17	26	1.84
94446--94814	178	2.1	180	85	2	501	29	17	15	37	1.91
96772--96832	18	3.4	18	93	0	95	4	40	0	54	1.22
96780--96831	18	2.9	18	100	0	104	0	42	0	57	0.98
97014--97113	33	3.0	33	95	0	182	24	48	0	28	1.52
97147--97190	21	2.1	21	91	0	70	13	31	11	43	1.80
99545--99894	182	1.9	181	91	2	567	28	16	14	40	1.87

Tables:   1

The End!