genome.fa.s3593.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003593.1 Hibiscus syriacus cultivar Beakdansim tig00007584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119510

Tables:   1   

This is table  1  of  1  ( 114 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
918--974	30	1.9	30	82	7	71	24	17	36	21	1.94
2940--3206	146	1.8	146	80	1	320	20	24	18	36	1.95
3491--3518	3	9.3	3	100	0	56	64	0	0	35	0.94
6957--7024	25	2.8	25	93	6	115	35	20	0	44	1.52
7273--7309	19	1.9	19	100	0	74	32	32	18	16	1.93
7274--7318	19	2.4	19	88	7	65	40	24	20	15	1.91
10266--10299	2	17.0	2	93	0	59	52	0	0	47	1.00
10644--10744	34	2.9	35	84	8	127	31	7	11	48	1.69
10644--10702	17	3.4	17	77	9	55	35	8	6	49	1.60
10661--10745	17	4.9	17	78	9	93	29	7	14	49	1.69
10644--10744	36	2.9	35	85	7	127	31	7	11	48	1.69
12030--12476	233	1.9	233	84	2	594	33	24	16	25	1.96
13519--13561	6	7.5	6	79	10	54	81	2	13	2	0.89
13519--13561	11	3.8	11	90	9	61	81	2	13	2	0.89
13520--13561	17	2.5	17	92	0	66	80	2	14	2	0.90
14161--14219	2	29.5	2	100	0	118	49	0	0	50	1.00
18035--18078	19	2.3	19	88	0	61	40	11	2	45	1.53
23187--23303	9	13.2	8	72	18	65	13	7	0	77	1.02
23188--23322	5	27.6	5	71	16	88	14	7	1	77	1.06
23188--23308	31	4.1	29	75	18	101	14	7	0	77	1.02
23188--23308	23	5.2	25	72	22	95	14	7	0	77	1.02
23190--23340	65	2.2	70	81	11	172	13	9	1	74	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24031--24075	17	2.6	17	92	0	81	28	28	8	33	1.87
27825--27854	5	6.0	5	100	0	60	80	0	20	0	0.72
29335--29359	6	4.2	6	100	0	50	84	0	0	16	0.63
32260--32310	25	2.0	25	88	0	75	56	0	0	43	0.99
32291--32346	20	2.8	20	69	12	53	42	0	1	55	1.10
32478--32605	11	13.8	11	65	34	88	45	0	0	54	0.99
32467--32612	18	8.1	18	98	0	265	45	0	0	54	1.00
33547--33640	31	3.0	31	79	1	89	38	7	1	53	1.36
33683--33736	26	2.0	26	85	3	72	40	5	3	50	1.44
33804--33875	32	2.2	33	85	7	103	51	2	6	38	1.43
33939--33982	20	2.1	21	87	4	63	45	2	6	45	1.42
40243--40275	16	2.1	16	100	0	66	39	18	0	42	1.50
40889--40941	24	2.2	24	83	12	65	16	11	16	54	1.70
42003--42077	16	4.7	16	91	0	123	10	12	20	57	1.64
42142--42174	16	2.1	16	94	0	57	6	9	24	60	1.49
43207--43267	5	10.8	5	74	22	50	26	0	3	70	1.02
43189--43262	37	2.0	37	100	0	148	29	0	5	64	1.15
43189--43278	37	2.4	37	90	7	130	28	1	5	64	1.23
46033--46077	23	2.0	23	82	8	56	31	17	2	48	1.59
46029--46085	24	2.4	23	77	16	62	35	17	1	45	1.59
46500--46581	21	4.0	20	72	12	76	23	24	18	34	1.96
46632--46683	21	2.5	20	81	3	50	21	23	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46509--46725	103	2.1	103	84	5	278	29	19	19	30	1.97
46679--46741	21	3.0	21	100	0	126	38	14	23	23	1.92
46736--46828	20	4.7	20	84	0	114	29	27	17	25	1.97
47337--47379	20	2.2	20	91	0	68	11	18	18	51	1.76
47516--47570	25	2.2	24	78	15	58	20	9	18	52	1.71
48700--48747	18	2.7	18	93	0	87	27	45	12	14	1.81
49288--49343	20	2.8	20	83	2	69	37	23	23	16	1.93
49327--49390	19	3.6	19	72	20	75	45	20	20	14	1.85
49449--49541	20	4.7	20	86	0	114	17	19	25	37	1.93
49896--49965	21	3.3	20	74	7	68	24	40	15	20	1.91
49912--49992	21	3.9	20	72	6	54	23	34	19	22	1.96
49889--49977	42	2.1	42	87	4	126	22	40	14	22	1.90
51389--51427	14	2.8	14	84	0	51	35	0	17	46	1.49
51525--51567	20	2.2	20	91	0	68	48	25	13	11	1.77
51564--51600	19	1.9	19	88	0	56	51	16	21	10	1.74
51621--51687	20	3.3	20	73	8	73	17	20	20	40	1.92
52791--52844	24	2.2	24	83	0	63	24	14	18	42	1.88
53019--53043	12	2.1	12	100	0	50	72	0	28	0	0.86
55312--55426	33	3.2	36	75	15	116	41	20	20	16	1.90
55312--55396	19	4.7	19	69	15	54	42	21	21	15	1.89
55332--55445	33	3.4	34	82	8	153	42	18	22	15	1.88
55452--55510	19	3.4	19	73	22	74	13	22	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55617--55653	14	2.6	14	86	0	56	45	24	2	27	1.66
57040--57119	42	1.9	42	84	0	106	22	17	38	21	1.93
57341--57524	91	2.0	89	89	7	280	47	17	12	22	1.81
59213--59339	20	7.1	19	68	22	87	44	20	23	11	1.85
59262--59350	14	5.6	14	71	23	70	42	23	23	10	1.84
59238--59358	33	3.6	33	94	1	206	42	22	24	10	1.85
59363--59436	19	4.1	19	70	24	70	10	21	21	45	1.82
59966--60059	20	4.7	20	84	2	125	21	21	18	39	1.93
59966--60059	41	2.3	40	87	1	125	21	21	18	39	1.93
60056--60111	20	2.7	21	80	5	69	42	16	21	19	1.89
59973--60093	61	2.0	61	80	6	138	25	20	19	34	1.96
68895--68920	6	4.3	6	100	0	52	46	0	0	53	1.00
69039--69065	2	13.5	2	100	0	54	51	0	0	48	1.00
70159--70199	20	2.0	20	86	9	57	39	9	7	43	1.65
72036--72073	20	1.9	20	94	0	67	21	44	21	13	1.85
77826--77887	19	3.2	19	86	2	79	27	30	27	14	1.95
77840--77887	19	2.6	19	93	3	80	27	35	25	12	1.92
90067--90137	35	2.0	36	86	8	101	32	18	25	23	1.97
90725--90801	21	3.7	21	77	13	79	24	16	22	36	1.94
92215--92418	105	1.9	105	87	0	300	41	13	10	34	1.79
95235--95459	51	4.5	51	81	7	268	47	16	12	24	1.81
95224--95423	101	2.0	102	86	3	278	48	15	13	23	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96427--96554	51	2.5	51	87	1	177	16	34	32	17	1.92
96566--96685	49	2.4	49	89	5	181	24	26	22	26	2.00
99979--100394	205	2.0	207	93	6	727	46	11	9	31	1.72
100413--100485	26	2.8	26	67	24	64	64	4	6	24	1.36
100613--100655	12	3.6	12	83	0	50	6	25	25	41	1.80
100602--100656	15	3.9	15	74	13	62	9	27	23	40	1.85
102476--102696	110	2.0	111	92	0	372	46	9	8	36	1.66
102821--102862	10	4.2	10	79	11	50	42	0	28	28	1.56
102942--103095	51	3.1	50	80	8	136	20	31	29	17	1.96
102972--103095	51	2.5	50	85	4	151	19	31	33	16	1.94
103497--103533	16	2.3	16	100	0	74	40	21	10	27	1.86
105774--105844	21	3.2	22	77	18	67	66	1	1	30	1.09
105803--105840	13	2.7	15	80	16	53	65	2	0	31	1.06
105774--105844	23	3.2	23	76	15	60	66	1	1	30	1.09
106644--106718	29	2.6	29	84	0	96	18	40	26	14	1.90
106645--106732	29	3.0	29	84	0	95	20	37	30	11	1.88
106934--107004	29	2.4	29	78	0	97	15	26	39	18	1.90
111575--111667	40	2.4	39	83	5	116	45	3	8	43	1.51
111575--111934	39	9.2	40	68	16	98	44	3	6	45	1.47
111659--111718	30	1.9	32	83	6	79	40	5	10	45	1.60
111713--111803	36	2.5	36	79	15	114	45	2	3	49	1.30
111700--111806	37	2.8	39	79	17	125	42	3	3	49	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111707--111886	84	2.2	83	86	7	249	46	3	4	45	1.41
111800--111922	37	3.4	34	77	14	111	47	4	6	42	1.48
111838--111963	43	3.0	41	76	12	123	48	3	6	41	1.47
116376--116527	75	2.0	76	97	2	288	43	13	15	27	1.84

Tables:   1

The End!