genome.fa.s3594.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003594.1 Hibiscus syriacus cultivar Beakdansim tig00007588_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68931

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870--1917	24	2.1	23	81	11	55	58	0	6	35	1.23
1896--1960	33	2.0	33	94	5	116	44	0	3	52	1.16
2119--2219	23	4.5	23	78	12	102	54	0	1	42	1.18
2088--2205	23	5.9	19	67	30	61	56	0	2	40	1.13
4792--5522	375	1.9	376	86	1	1038	36	17	16	30	1.92
12926--13001	21	3.6	21	75	7	73	32	23	23	19	1.97
18357--18389	16	2.1	16	100	0	66	57	24	12	6	1.57
18449--18503	23	2.4	23	90	0	83	61	16	9	12	1.55
18434--18493	13	4.8	13	72	14	54	61	18	8	11	1.54
18984--19034	21	2.4	21	93	0	84	41	15	31	11	1.83
21649--21688	13	3.0	13	89	7	62	50	0	0	50	1.00
26663--26702	17	2.2	17	86	8	53	22	0	0	77	0.77
28807--28863	21	2.8	20	84	5	71	19	33	24	22	1.97
32255--32310	18	2.9	18	89	7	76	17	33	26	21	1.96
32255--32312	21	3.0	20	90	7	84	17	32	25	24	1.96
34501--34559	22	2.7	23	76	7	68	42	18	1	37	1.61
34957--35127	64	2.7	64	93	2	283	24	24	18	32	1.97
36886--36951	5	13.0	5	78	12	55	19	7	0	72	1.08
40944--41860	458	2.0	455	98	0	1780	26	20	22	30	1.98
50204--50323	48	2.5	48	85	5	145	20	32	15	32	1.93
58543--58603	24	2.6	24	76	7	63	29	21	18	31	1.96
63829--63880	20	2.6	21	75	9	54	34	13	26	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67352--67400	22	2.1	24	85	7	66	14	8	28	48	1.72
68378--68406	3	10.0	3	92	7	51	31	0	0	68	0.89

Tables:   1

The End!