Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003595.1 Hibiscus syriacus cultivar Beakdansim tig00007594_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116349

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20642--20668
2
13.5
2
100
0
54
48
0
0
51
1.00
32285--32364
42
1.9
42
86
0
115
32
15
21
31
1.94
39513--39564
22
2.4
22
90
0
77
30
15
9
44
1.78
40158--40363
82
2.5
82
81
7
229
34
21
12
31
1.91
41699--41741
21
2.0
23
86
9
63
13
6
11
67
1.41
42746--42778
17
2.0
17
88
5
50
9
3
6
81
0.95
43006--43045
20
2.1
20
86
9
57
45
25
5
25
1.73
45814--45858
23
2.0
22
86
4
63
55
2
2
40
1.24
45849--45909
26
2.4
26
83
8
72
50
0
3
45
1.17
45807--45930
64
2.0
63
81
10
146
50
0
3
45
1.23
57648--57707
21
2.9
21
97
0
111
25
25
26
23
2.00
61840--62119
83
3.4
83
79
5
325
32
18
18
31
1.95
61853--62152
164
1.8
165
87
0
449
32
19
17
31
1.95
61840--62152
83
3.8
82
77
7
312
32
18
17
30
1.95
63503--63686
93
2.0
94
92
3
309
53
10
8
27
1.63
64580--64616
18
2.1
18
94
0
65
32
16
35
16
1.91
64668--64705
18
2.2
17
90
4
58
42
18
5
34
1.73
74120--74258
60
2.3
61
80
14
164
41
5
20
33
1.76
74155--74288
60
2.2
60
81
12
143
42
6
17
32
1.76
80993--81020
2
14.0
2
100
0
56
50
0
0
50
1.00
89058--89096
20
2.0
20
89
0
60
30
23
7
38
1.83
100206--100277
29
2.5
28
82
6
74
66
4
15
13
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105923--105985
26
2.4
26
78
5
74
55
14
4
25
1.58
110085--110133
18
2.8
17
75
9
53
42
38
4
14
1.64
112209--112243
17
2.1
17
94
0
61
28
22
20
28
1.98
115832--115882
14
3.6
14
81
2
57
27
19
21
31
1.97

Tables:   1

The End!