genome.fa.s3597.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003597.1 Hibiscus syriacus cultivar Beakdansim tig00007600_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42146

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356--402	2	24.5	2	91	8	80	51	0	0	48	1.00
605--671	25	2.6	26	78	17	68	59	1	0	38	1.06
649--681	15	2.1	17	88	11	52	69	0	0	30	0.88
1061--1088	14	2.0	14	100	0	56	50	35	7	7	1.57
1972--2038	3	22.0	3	79	8	64	61	0	0	38	0.96
2821--2873	27	1.9	28	85	11	74	35	1	0	62	1.06
4561--4630	34	2.1	34	81	10	81	54	10	5	30	1.57
4970--5048	18	4.4	18	67	27	60	63	0	2	34	1.08
5418--5519	37	2.8	37	84	0	123	30	13	13	42	1.83
6065--6728	105	6.3	105	91	3	953	21	18	26	33	1.96
6902--6970	36	1.9	36	90	0	111	40	14	20	24	1.90
6870--7187	104	3.1	104	92	1	516	36	11	20	31	1.88
7090--7164	39	1.9	39	83	5	98	37	13	22	26	1.91
7271--7432	72	2.2	75	82	8	190	40	11	18	29	1.85
8573--9109	183	2.9	183	96	0	968	31	21	20	26	1.98
14863--14903	22	1.9	21	85	5	55	56	2	4	36	1.34
15057--15093	19	2.0	19	85	15	51	67	0	2	29	1.04
15051--15145	18	5.4	18	65	26	53	63	1	2	33	1.13
15520--15616	37	2.6	37	86	0	131	31	9	14	44	1.77
16217--16878	333	2.0	333	100	0	1324	29	16	21	31	1.96
19176--19279	10	10.4	10	85	0	64	4	34	38	22	1.75
19191--19277	5	17.4	5	90	0	120	1	35	37	25	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24183--25937	877	2.0	877	98	0	3384	32	18	18	31	1.95
27516--27540	13	1.9	13	100	0	50	56	4	0	40	1.18
33083--33135	21	2.5	21	87	0	79	20	24	18	35	1.95
33125--33237	20	5.7	20	92	0	190	38	18	19	23	1.93
33224--33311	20	4.4	20	94	0	131	30	23	19	26	1.98
33125--33292	40	4.2	40	78	13	152	35	20	19	23	1.96
34152--34205	24	2.2	24	93	0	90	20	18	20	40	1.91
36857--36901	21	2.1	21	87	0	63	31	28	24	15	1.96
36882--36986	45	2.3	45	96	0	192	32	26	20	20	1.97
37500--37540	2	20.5	2	100	0	82	51	0	0	48	1.00
38191--38268	31	2.5	31	83	8	104	20	20	23	35	1.96
38241--38341	30	3.4	29	89	5	132	20	20	25	32	1.97
41586--41626	21	2.0	21	85	0	55	29	29	24	17	1.97
41607--41711	45	2.3	45	98	0	201	32	27	20	19	1.97

Tables:   1

The End!