genome.fa.s3598.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003598.1 Hibiscus syriacus cultivar Beakdansim tig00007611_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28934

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1260--1316	2	28.5	2	100	0	114	0	49	0	50	1.00
1316--1352	2	18.5	2	100	0	74	48	0	0	51	1.00
3047--3119	18	3.8	18	77	13	83	30	31	17	20	1.96
6728--7042	108	2.9	109	88	2	436	28	27	14	29	1.95
6728--7026	163	1.8	163	92	1	510	27	27	15	29	1.96
6704--7097	55	7.2	56	82	7	409	28	26	15	29	1.96
6704--7065	110	3.3	110	83	5	450	27	27	15	29	1.96
6728--7149	218	1.9	217	80	9	495	27	27	15	29	1.96
7016--7452	51	8.5	51	87	5	569	24	24	18	32	1.97
7071--7452	154	2.5	153	90	3	583	24	24	18	33	1.97
7822--8087	36	7.4	36	86	2	311	20	19	23	36	1.95
7822--8087	108	2.5	108	83	3	345	20	19	23	36	1.95
8808--9118	127	2.4	127	86	5	423	20	26	16	36	1.94
12976--13070	21	4.6	21	88	8	92	15	21	24	38	1.92
12994--13112	21	5.7	21	80	7	109	18	21	21	38	1.93
13000--13112	42	2.7	43	82	8	135	17	21	21	39	1.92
17736--18049	108	2.9	109	86	2	425	28	27	14	29	1.95
17736--18033	163	1.8	162	91	2	490	27	27	14	29	1.95
17769--18049	108	2.6	108	89	0	427	28	28	13	29	1.95
17712--18104	55	7.2	56	81	7	391	28	26	15	29	1.96
17724--18441	162	4.5	157	79	11	472	25	25	16	31	1.97
18023--18458	51	8.5	51	87	5	560	24	24	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18078--18458	154	2.5	153	89	4	574	24	24	18	33	1.97
18828--19093	36	7.4	36	86	2	311	20	19	23	36	1.95
18828--19093	108	2.5	108	83	3	345	20	19	23	36	1.95
19814--20123	126	2.4	127	86	4	419	20	26	16	36	1.94
23980--24115	21	6.6	20	86	9	104	16	21	22	39	1.92
23995--24115	21	5.9	21	90	4	151	17	21	22	38	1.93

Tables:   1

The End!