genome.fa.s3599.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003599.1 Hibiscus syriacus cultivar Beakdansim tig00007612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60068

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020--1917	2	451.0	2	79	3	799	41	46	4	6	1.50
1847--1941	4	23.2	4	72	8	66	47	33	1	17	1.55
2976--3040	28	2.3	28	86	5	96	26	13	16	43	1.86
3427--3458	3	10.7	3	93	0	55	37	0	0	62	0.95
4799--4965	29	5.7	30	68	14	80	16	11	13	57	1.65
4826--4965	59	2.4	60	80	10	148	17	11	13	57	1.64
4892--4991	30	3.4	28	80	8	101	13	13	16	58	1.64
9949--10020	20	3.7	20	79	5	67	40	12	18	29	1.87
12176--12308	20	6.5	20	70	14	74	36	23	18	21	1.95
12239--12732	20	24.5	20	76	10	258	34	24	19	22	1.96
12300--12511	41	5.2	41	91	1	338	37	24	18	19	1.94
12239--12532	40	7.3	40	83	5	326	37	24	19	19	1.94
12582--12637	21	2.7	21	81	8	69	23	25	17	33	1.96
13591--13644	24	2.2	24	93	0	90	20	18	20	40	1.91
16238--16317	33	2.4	33	93	0	133	11	21	21	46	1.82
16259--16317	19	3.4	19	73	22	74	13	22	18	45	1.84
16267--16317	17	3.1	17	69	25	54	13	23	17	45	1.84
16424--16461	14	2.7	15	88	12	62	47	18	0	34	1.49
17809--17875	21	3.2	21	68	4	55	19	20	35	23	1.95
18352--18451	19	5.7	17	78	13	89	45	23	22	10	1.82
18448--18491	19	2.3	19	88	0	61	13	13	29	43	1.83
18463--18558	33	2.9	33	92	0	147	9	20	23	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18462--18611	19	8.4	19	70	18	90	12	18	24	45	1.83
18665--19038	94	4.0	94	92	2	610	47	19	11	21	1.81
18681--19038	186	1.9	186	93	1	610	46	18	12	22	1.82
20722--20792	20	3.6	19	86	5	88	39	22	23	14	1.91
20803--20867	33	2.0	33	90	0	103	13	18	20	47	1.82
20845--20908	21	3.1	21	84	6	87	10	20	17	51	1.75
20852--20923	20	3.6	19	83	5	81	12	15	19	52	1.74
21480--21573	21	4.6	21	83	11	124	18	17	27	37	1.92
21483--21573	41	2.2	41	92	0	146	17	17	27	37	1.92
21483--21595	41	2.8	41	86	5	122	18	17	27	36	1.94
21684--21737	20	2.7	19	75	8	63	16	18	31	33	1.93
26592--26643	14	3.6	14	97	2	95	26	34	15	23	1.94
28238--28660	208	2.0	208	90	1	659	36	17	19	27	1.94
29439--29508	2	35.0	2	100	0	140	50	0	0	50	1.00
31288--31815	171	3.1	171	89	0	788	34	20	16	27	1.95
32920--33018	23	4.3	23	73	7	67	33	26	22	18	1.96
32923--33021	46	2.2	46	79	0	108	34	24	23	18	1.96
35696--35733	20	1.9	20	88	0	58	26	36	26	10	1.89
42810--42861	24	2.2	24	82	0	59	46	21	9	23	1.80
42849--42951	23	4.5	23	82	0	107	36	26	18	18	1.94
42849--42951	46	2.2	46	85	0	143	36	26	18	18	1.94
43088--43122	14	2.5	14	100	0	70	37	22	5	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44952--45204	101	2.5	102	79	6	271	31	21	17	30	1.96
51202--51237	16	2.2	16	95	0	63	38	11	11	38	1.76
54804--54866	18	3.4	18	84	8	65	52	0	0	47	1.00
54820--54871	21	2.7	21	85	11	67	53	0	0	46	1.00
56463--56512	23	2.2	23	85	7	66	48	0	18	34	1.48
56611--56641	14	2.2	14	100	0	62	25	0	16	58	1.38
56724--56791	34	2.0	34	91	2	111	33	2	7	55	1.42
57302--57361	20	2.9	21	80	5	77	26	21	35	16	1.95
58984--59025	17	2.5	17	80	3	50	61	2	0	35	1.09
59155--59243	30	2.7	31	78	18	92	55	0	1	43	1.07
59208--59258	22	2.2	22	82	6	66	56	1	1	39	1.22
59366--59512	59	2.5	60	80	4	163	21	32	25	20	1.97
59399--59512	61	1.9	59	83	7	149	22	33	24	19	1.97

Tables:   1

The End!