Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000036.1 Hibiscus syriacus cultivar Beakdansim tig00000057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66312

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
830--874
2
23.5
2
84
8
58
48
2
2
46
1.26
1406--1651
72
3.4
73
91
5
387
34
10
4
50
1.58
1406--1651
69
3.4
71
88
5
370
34
10
4
50
1.58
5569--5599
15
2.1
15
93
0
53
45
0
0
54
0.99
8266--8325
27
2.2
27
87
0
84
46
15
11
26
1.79
12022--12089
27
2.6
27
95
4
122
41
16
11
30
1.84
19151--19221
27
2.6
27
82
6
81
47
21
12
18
1.81
20366--20426
21
2.9
21
85
0
77
31
27
13
27
1.94
20678--20725
15
3.2
15
78
0
51
33
18
8
39
1.81
21158--21192
18
1.9
18
88
0
52
31
34
11
22
1.90
22851--22914
23
2.8
23
82
0
83
31
25
25
18
1.98
28850--28923
19
3.7
20
77
12
89
37
20
18
22
1.94
28850--28938
41
2.2
41
92
6
146
37
22
17
22
1.94
28868--28945
22
3.8
20
75
16
70
35
23
16
24
1.95
31303--31427
50
2.5
49
79
3
142
17
34
28
19
1.95
31696--32028
111
3.0
111
96
0
603
36
7
11
44
1.70
33862--33923
9
6.9
9
79
0
70
33
19
33
12
1.90
33865--33909
18
2.5
18
96
0
81
33
20
33
13
1.91
36862--36891
9
3.3
9
95
0
51
26
23
10
40
1.86
37655--37688
12
3.0
12
87
12
54
32
8
50
8
1.64
42440--42594
59
2.6
59
84
4
168
33
14
15
36
1.88
42459--42594
59
2.3
59
85
5
175
36
13
14
35
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42732--42788
28
2.0
28
93
0
96
33
22
15
28
1.95
43589--43613
2
12.5
2
100
0
50
48
0
0
52
1.00
46121--46148
10
2.8
10
100
0
56
53
0
39
7
1.28
48445--48522
24
3.4
23
83
3
95
28
19
16
35
1.93
48510--48545
12
3.0
12
83
0
54
27
16
16
38
1.90
53716--53751
2
18.0
2
100
0
72
50
0
0
50
1.00
65614--65662
26
2.0
25
84
15
66
28
10
8
53
1.63

Tables:   1

The End!