genome.fa.s360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000360.1 Hibiscus syriacus cultivar Beakdansim tig00000656_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195488

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921--954	16	2.2	15	89	5	50	26	0	11	61	1.30
5093--5133	21	2.0	21	100	0	82	63	12	14	9	1.52
9036--9109	32	2.2	33	83	9	96	33	17	25	22	1.96
9046--9109	32	2.0	32	90	0	101	34	17	25	23	1.96
9089--9190	42	2.4	42	85	0	132	37	16	22	23	1.94
14092--14132	8	5.2	8	82	5	57	34	0	29	36	1.58
14213--14563	128	2.7	128	95	0	621	20	23	21	34	1.97
14967--15067	34	3.0	34	86	0	148	38	3	3	53	1.38
15587--15691	40	2.6	40	87	6	122	22	26	30	20	1.98
15592--15697	21	5.2	20	78	6	97	21	25	33	19	1.97
17258--17311	17	3.2	17	78	2	56	59	3	0	37	1.15
17454--17508	15	3.2	17	75	17	51	58	0	1	40	1.09
32208--32232	6	4.2	6	100	0	50	0	36	0	64	0.94
35379--35439	26	2.4	25	86	2	86	32	31	16	19	1.94
35604--35646	23	1.9	23	90	4	70	9	11	39	39	1.74
39930--40003	27	2.7	27	80	0	76	29	28	21	20	1.98
40819--40852	16	2.1	16	94	0	59	32	8	26	32	1.87
53708--53763	17	3.3	17	94	0	103	12	23	44	19	1.84
53761--53857	19	5.1	19	80	10	108	26	29	25	17	1.97
53761--53866	38	2.8	39	85	8	130	27	29	25	17	1.98
53792--53865	29	2.6	28	87	6	96	29	28	25	16	1.97
61059--61116	5	10.8	5	78	14	62	6	22	51	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61052--61116	22	3.0	22	100	0	130	9	23	49	18	1.76
61115--61231	19	6.1	19	76	14	96	27	27	25	19	1.99
61124--61231	9	11.1	10	75	10	91	26	26	25	20	1.99
61146--61231	29	2.9	30	75	6	68	27	25	26	19	1.99
63202--63253	24	2.2	24	82	6	61	51	5	7	34	1.54
66880--66934	27	2.0	27	82	6	67	65	3	1	29	1.20
69856--69893	14	2.6	15	87	4	51	31	0	2	65	1.06
70019--70144	43	3.0	43	81	15	140	30	2	1	65	1.15
70119--70178	9	6.3	9	72	16	50	15	5	0	80	0.88
70144--70188	21	2.1	22	83	4	56	11	8	0	80	0.92
70182--70225	19	2.4	18	85	7	54	18	15	0	65	1.27
74248--74354	32	3.3	32	88	0	151	28	13	19	38	1.89
74983--75103	59	2.0	60	98	1	235	33	20	16	28	1.95
75474--75632	87	1.8	87	91	2	266	33	17	12	35	1.88
75561--75798	100	2.4	102	88	1	345	30	18	12	38	1.87
75699--75771	37	2.0	37	94	0	128	26	19	13	41	1.88
75835--75937	36	2.8	37	86	2	163	27	20	15	36	1.93
75849--76034	102	1.8	102	84	4	259	27	18	13	39	1.89
75952--76068	36	3.2	36	85	4	164	26	19	13	40	1.89
76054--76141	37	2.4	37	85	7	110	38	22	7	30	1.83
76331--76456	62	2.0	64	93	6	222	29	26	20	23	1.99
77259--77313	22	2.7	20	73	21	51	23	5	5	65	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77350--77408	13	4.8	12	76	14	57	22	1	1	74	1.00
77368--77444	17	4.4	17	74	22	70	15	2	1	80	0.89
77379--77444	34	1.9	34	87	6	98	15	3	1	80	0.91
77370--77444	9	8.8	8	77	16	71	16	2	1	80	0.90
87236--87296	32	1.9	32	83	12	81	14	29	3	52	1.58
94207--94248	15	2.9	15	82	7	50	33	0	0	66	0.92
94233--94259	10	2.7	10	100	0	54	25	0	0	74	0.83
95591--95617	2	13.5	2	100	0	54	51	0	0	48	1.00
98244--98277	6	5.7	6	92	0	50	0	44	14	41	1.45
99642--99681	21	1.9	21	84	0	53	47	10	10	32	1.70
102580--102671	19	5.6	16	71	22	66	38	1	0	60	1.04
102582--102679	48	2.0	47	81	14	112	37	1	0	61	1.03
102578--102664	34	2.7	32	75	19	90	40	1	0	58	1.05
102591--102679	16	5.2	16	72	17	72	38	1	0	60	1.04
111234--111566	111	3.0	111	96	0	612	45	11	7	36	1.68
111834--111958	50	2.5	51	77	6	139	22	28	32	16	1.96
113815--113887	31	2.4	31	88	0	110	32	9	6	50	1.61
113948--114007	31	1.9	31	86	0	84	51	1	3	43	1.28
113961--114083	27	4.8	25	74	13	88	53	0	3	42	1.22
113999--114083	24	3.3	26	75	11	86	52	0	3	43	1.18
115804--115858	2	27.5	2	100	0	110	50	0	0	49	1.00
117163--117218	22	2.5	22	85	5	67	16	1	7	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117550--117583	16	2.1	16	89	10	52	17	8	11	61	1.54
118694--118740	19	2.5	20	75	10	53	38	2	4	55	1.31
120783--120938	84	1.9	83	91	4	260	23	12	21	42	1.86
122592--122635	22	2.0	22	100	0	88	36	9	13	40	1.76
124232--124285	25	2.2	24	83	9	65	61	3	27	7	1.40
129838--129877	21	2.0	20	85	9	55	42	10	12	35	1.76
134360--134440	31	2.6	31	88	0	117	39	9	2	48	1.50
137788--137969	51	3.7	48	80	10	199	23	12	17	47	1.81
145946--145984	13	2.9	13	81	7	51	58	0	2	38	1.12
159264--159303	19	2.1	19	100	0	80	37	15	20	27	1.92
168735--169843	228	4.9	229	89	2	1401	21	24	25	28	1.99
170901--170941	17	2.4	17	95	0	73	26	34	14	24	1.94
173424--173560	64	2.2	63	81	5	159	32	20	23	24	1.98
173529--173605	20	3.7	20	77	14	75	27	23	24	24	2.00
174715--174817	30	3.4	30	95	0	179	24	21	24	30	1.99
176454--176514	7	8.7	7	98	0	113	40	0	14	44	1.46
178580--180543	4	493.5	4	95	1	3453	48	24	1	25	1.60
186066--186100	2	17.5	2	100	0	70	48	0	0	51	1.00
186813--186858	2	23.0	2	100	0	92	0	50	0	50	1.00
186858--186906	2	24.5	2	100	0	98	48	0	0	51	1.00
189878--189927	2	25.0	2	100	0	100	50	0	0	50	1.00

Tables:   1

The End!