genome.fa.s3600.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003600.1 Hibiscus syriacus cultivar Beakdansim tig00007615_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80147

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4875--4913	21	1.9	20	94	5	69	28	10	7	53	1.62
4364--5903	396	3.9	396	91	2	2372	41	12	14	31	1.83
4364--5903	199	7.8	200	90	3	2320	41	12	14	31	1.83
5271--5309	21	1.9	20	89	5	60	30	10	7	51	1.64
6185--6253	36	1.9	36	96	0	129	26	34	5	33	1.80
6194--6261	18	3.8	18	81	16	79	25	35	4	35	1.76
10693--10738	21	2.2	20	85	7	65	23	13	15	47	1.80
10468--10871	202	2.0	202	92	1	666	39	13	12	34	1.83
21779--23728	975	2.0	975	91	1	3118	34	22	15	27	1.94
26708--26746	14	2.8	14	88	7	53	35	23	23	17	1.95
27499--27523	2	12.5	2	100	0	50	48	0	0	52	1.00
45038--45083	24	1.9	24	82	8	58	13	26	6	54	1.62
45517--45567	3	16.3	3	80	15	59	68	0	0	31	0.90
45517--45567	10	5.4	9	82	15	59	68	0	0	31	0.90
45519--45564	21	2.2	20	85	14	67	69	0	0	30	0.89
47072--47130	30	2.0	30	86	0	82	42	11	11	33	1.78
47469--47739	43	6.3	43	78	7	255	27	17	22	31	1.97
47469--47706	130	1.8	129	82	6	302	28	16	23	31	1.96
47471--47739	87	3.1	87	78	6	228	27	17	23	31	1.97
47720--47917	44	4.6	43	84	2	182	28	15	22	33	1.94
56801--56949	42	3.5	42	86	1	192	42	18	16	22	1.88
56922--57053	41	3.2	41	75	12	135	31	20	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58480--58594	57	2.0	57	89	0	176	32	15	15	36	1.89
59173--59204	3	10.7	3	100	0	64	65	0	0	34	0.93
59431--59468	15	2.5	15	83	8	51	21	65	2	10	1.35
59455--59531	30	2.6	30	83	4	102	20	53	1	24	1.53
63249--63275	13	2.1	13	100	0	54	37	14	25	22	1.93
67653--67697	19	2.2	20	88	11	65	28	4	2	64	1.25
67692--67740	23	2.2	22	88	3	71	40	2	2	55	1.23
67763--67824	15	3.9	15	72	12	61	40	0	0	59	0.97
67851--67904	27	2.0	27	88	3	81	46	3	3	46	1.38
70101--70145	13	3.5	13	84	3	56	35	35	2	26	1.69
70465--70523	21	2.8	22	80	19	72	76	1	15	6	1.07
70466--70531	21	3.2	21	77	10	57	78	1	13	6	1.00
74383--74410	3	9.3	3	100	0	56	67	0	0	32	0.91
74422--74637	9	22.9	9	73	21	144	53	5	1	40	1.32
74437--74641	2	108.0	2	72	21	149	53	4	0	40	1.29
74384--74641	7	36.0	7	74	16	185	54	5	1	39	1.31

Tables:   1

The End!