genome.fa.s3601.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003601.1 Hibiscus syriacus cultivar Beakdansim tig00007616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69800

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
813--914	30	3.4	30	90	5	152	29	16	10	43	1.82
8775--8799	4	6.2	4	100	0	50	24	0	0	76	0.80
14806--14838	16	2.1	16	88	11	50	66	0	3	30	1.06
18636--18672	16	2.2	17	95	4	67	62	0	13	24	1.31
20381--20424	17	2.6	17	85	0	52	47	0	4	47	1.22
21000--21037	19	2.0	20	89	5	60	57	13	2	26	1.49
21599--21659	25	2.4	25	97	0	113	29	31	32	6	1.83
23844--23890	3	15.7	3	91	8	78	34	0	0	65	0.93
23844--23906	21	3.0	21	88	4	83	30	1	3	65	1.18
27594--27654	30	2.0	32	93	6	108	14	14	9	60	1.58
30726--30844	11	10.2	11	73	16	80	72	10	14	3	1.24
30726--30844	23	5.1	22	75	16	89	72	10	14	3	1.24
32031--32204	4	44.0	4	97	2	334	50	25	0	24	1.50
32847--32965	36	3.4	36	81	5	120	31	20	12	36	1.90
32862--32965	36	3.0	36	83	4	133	32	19	11	36	1.87
33213--33284	29	2.5	28	90	2	108	36	6	13	43	1.72
33213--33299	28	3.1	28	88	1	111	35	6	12	44	1.69
33295--33398	52	2.0	53	94	1	183	30	13	18	37	1.89
33384--33534	29	5.2	28	84	10	189	33	8	13	43	1.75
33385--33534	57	2.6	57	86	7	196	33	8	14	44	1.75
33487--33654	69	2.5	67	91	4	261	29	12	10	47	1.75
33910--34010	27	3.4	27	65	23	69	27	13	14	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33873--34046	62	2.8	62	94	0	294	31	14	12	41	1.84
34612--34693	28	2.9	28	83	3	94	24	12	13	50	1.76
34719--34900	40	4.3	40	74	15	143	25	31	17	25	1.97
34702--35049	129	2.6	133	81	7	413	26	31	18	23	1.97
35009--35085	40	1.9	40	97	0	145	24	33	18	23	1.96
35251--35300	3	16.7	3	91	8	84	34	0	0	66	0.92
35252--35326	21	3.5	22	82	7	93	32	1	2	64	1.16
40327--40366	16	2.5	16	87	0	62	55	20	0	25	1.44
44033--44070	20	1.9	20	94	0	67	55	26	0	18	1.43
44320--44346	4	6.8	4	100	0	54	51	22	0	25	1.48
44761--44818	30	1.9	30	86	6	82	46	6	8	37	1.61
44851--44921	31	2.3	31	82	2	81	35	2	14	47	1.58
46546--46627	16	4.8	18	87	6	118	35	4	31	28	1.78
47657--48139	30	15.9	30	77	4	414	29	40	9	20	1.84
47657--48136	60	7.9	60	86	3	642	29	40	9	20	1.84
47834--47888	29	2.0	25	86	13	74	25	43	10	20	1.84
47657--48088	239	1.8	239	90	1	695	30	39	9	20	1.84
48776--48811	2	18.0	2	100	0	72	50	0	0	50	1.00
50279--51407	30	37.6	30	72	6	705	31	39	7	20	1.81
50488--50539	24	2.2	24	85	0	68	30	48	5	15	1.68
62001--62035	17	1.9	19	88	11	56	51	8	2	37	1.47
62336--62377	22	1.9	22	85	9	59	40	9	7	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62879--62907	14	2.0	15	93	6	51	13	13	13	58	1.63
63249--63287	20	2.0	20	100	0	78	25	33	30	10	1.89
64312--64387	22	3.5	21	81	10	82	22	26	26	25	2.00

Tables:   1

The End!