genome.fa.s3603.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003603.1 Hibiscus syriacus cultivar Beakdansim tig00007618_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38800

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972--1858	215	4.2	214	87	6	1277	50	8	12	28	1.69
1946--2010	19	3.4	19	78	17	80	44	3	7	44	1.48
3354--3421	29	2.4	29	76	13	70	20	7	1	70	1.19
3462--3501	21	1.9	21	90	10	64	7	5	7	80	1.03
3576--3649	27	2.9	26	75	15	73	17	20	0	62	1.33
3610--3658	17	3.0	15	77	16	53	20	20	0	59	1.38
3609--3657	16	3.0	16	77	16	55	22	20	0	57	1.41
3832--3856	13	1.9	13	100	0	50	16	12	0	72	1.13
4430--4461	13	2.5	13	94	0	55	50	9	3	37	1.51
4549--4624	18	4.1	19	72	12	50	44	3	3	47	1.40
4619--4845	33	6.6	33	73	17	169	43	8	6	42	1.60
4619--4944	18	18.2	18	64	25	97	42	9	7	41	1.64
4637--4809	48	3.4	52	80	13	173	43	8	5	41	1.59
4627--4875	136	1.8	137	96	0	464	43	8	6	41	1.60
4778--4946	38	4.4	38	77	14	159	41	9	8	40	1.67
4778--4946	80	2.2	75	86	7	223	41	9	8	40	1.67
4920--4980	32	2.0	31	87	6	88	40	13	6	39	1.70
5008--5250	7	38.5	6	67	20	56	46	7	3	42	1.49
5008--5250	9	28.9	8	65	23	56	46	7	3	42	1.49
4997--5031	18	1.9	18	88	0	52	45	5	2	45	1.41
5010--5080	26	2.8	25	87	4	97	42	7	4	46	1.50
4675--5170	216	2.3	211	78	13	469	42	9	6	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5206--5560	18	20.6	18	69	16	200	45	5	7	41	1.56
5208--5347	48	2.9	48	80	9	169	47	5	5	42	1.49
5008--5250	2	115.5	2	64	23	56	46	7	3	42	1.49
5307--5356	9	5.6	9	79	9	57	52	6	4	38	1.45
5440--5616	58	3.1	58	91	1	277	41	7	9	41	1.65
5556--5657	48	2.1	49	85	5	136	46	6	7	39	1.60
5944--5977	18	1.9	18	88	5	52	11	14	5	67	1.39
6061--6413	123	3.1	113	79	13	341	29	27	6	36	1.82
6166--6388	123	1.8	122	91	2	367	29	27	8	34	1.86
6598--6752	12	13.0	11	71	17	73	49	32	2	14	1.57
6651--6775	6	20.5	6	71	6	54	48	36	2	13	1.56
6651--6775	12	10.2	13	78	10	74	48	36	2	13	1.56
6656--6763	19	5.9	18	73	9	67	49	35	1	13	1.54
6651--6775	18	6.8	19	75	11	102	48	36	2	13	1.56
7010--7433	31	13.7	31	91	0	634	25	4	22	47	1.69
9549--9578	13	2.3	13	94	0	51	33	10	23	33	1.88
9726--9776	20	2.5	20	83	0	57	15	11	15	56	1.66
9869--9925	23	2.5	23	85	0	69	21	17	28	33	1.96
11428--11490	30	2.1	29	82	8	74	31	6	28	33	1.82
12700--12734	18	1.9	18	100	0	70	17	48	22	11	1.79
12693--12723	13	2.4	13	100	0	62	16	48	22	12	1.80
12740--12874	29	4.8	29	77	5	132	28	5	22	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12769--12913	55	2.6	58	84	5	183	30	5	21	42	1.75
12764--12913	29	5.4	28	75	7	126	29	5	22	42	1.75
12740--12912	84	2.0	85	84	1	222	28	5	23	43	1.75
12944--12975	10	2.8	12	86	13	50	25	28	18	28	1.98
20069--20143	29	2.6	29	82	4	80	26	8	22	42	1.81
20126--20193	29	2.3	29	95	5	120	26	5	22	45	1.75
26913--27061	72	2.1	72	96	0	271	26	18	23	30	1.98
31607--31686	24	3.5	23	68	16	67	31	16	18	33	1.93
31589--31686	45	2.2	44	87	7	144	30	17	19	32	1.95
33958--33982	2	12.5	2	100	0	50	48	0	0	52	1.00
34507--34556	20	2.4	21	86	3	66	32	16	16	36	1.90
37569--37617	19	2.7	17	84	9	53	26	20	28	24	1.99
37563--37748	65	2.9	63	78	7	205	27	19	22	29	1.98
37563--37798	129	1.8	130	81	8	302	27	19	22	30	1.98
37589--37798	65	3.3	63	75	13	187	27	19	22	30	1.98

Tables:   1

The End!