genome.fa.s3604.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003604.1 Hibiscus syriacus cultivar Beakdansim tig00007623_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117981

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2575--2613	17	2.3	17	90	0	60	38	7	46	7	1.61
16855--16926	24	3.0	25	80	8	78	26	20	23	29	1.99
19549--19613	3	23.0	3	76	17	59	30	1	1	66	1.10
19549--19613	19	3.5	20	85	6	75	30	1	1	66	1.10
19562--19613	22	2.4	22	86	0	68	32	0	1	65	1.04
20820--20875	20	3.2	16	71	28	51	26	3	1	67	1.16
21839--21878	16	2.5	17	84	12	57	22	2	2	72	1.09
21849--21890	14	2.8	15	82	17	52	23	0	2	73	0.94
23324--23359	15	2.4	15	95	0	63	16	19	8	55	1.66
23320--23369	22	2.3	22	86	6	66	16	16	10	58	1.63
23316--23369	7	7.6	7	78	10	56	16	16	11	55	1.68
28880--29027	76	1.9	76	80	2	172	29	14	20	35	1.92
30338--30416	22	3.6	22	89	0	113	34	11	13	40	1.81
30934--31419	164	3.0	165	91	2	773	33	15	12	37	1.86
31459--31567	36	3.0	36	71	7	121	30	18	11	40	1.85
31459--31567	37	3.0	37	72	6	123	30	18	11	40	1.85
31563--31792	37	6.2	37	90	0	361	29	24	16	29	1.97
31954--32009	3	20.0	3	82	14	66	32	0	1	66	1.03
31953--32009	19	3.0	20	87	5	73	31	0	1	66	1.02
31944--32009	22	3.0	22	86	2	87	28	0	3	68	1.05
33184--33239	20	3.2	16	71	28	51	26	3	1	67	1.16
34995--35052	20	2.7	20	81	10	62	25	24	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35040--35176	64	2.2	63	84	6	170	24	23	18	33	1.97
37253--37287	11	3.0	11	84	15	52	54	28	0	17	1.43
37258--37291	13	2.6	13	100	0	68	50	32	0	17	1.47
39118--39145	11	2.5	11	100	0	56	21	0	0	78	0.75
39529--39591	20	2.9	21	79	9	65	15	25	34	23	1.95
43454--43675	117	1.9	117	82	5	279	28	15	9	46	1.76
48125--48215	2	45.5	2	100	0	182	49	0	0	50	1.00
49298--49343	23	2.0	23	88	12	69	67	4	10	17	1.37
53634--53658	11	2.3	11	100	0	50	0	0	8	92	0.40
53987--54033	23	2.1	23	88	11	71	68	4	12	14	1.36
55514--55579	23	2.9	23	90	0	105	28	22	25	22	1.99
58587--58646	3	20.3	3	76	10	61	63	3	3	30	1.27
58687--58886	103	1.9	103	92	2	339	36	22	13	27	1.92
63840--63903	23	2.8	23	87	0	92	28	26	26	18	1.98
63919--64136	103	2.1	103	95	0	391	36	22	13	26	1.92
70465--70512	20	2.3	20	82	3	60	16	0	14	68	1.21
70603--70636	14	2.4	14	100	0	68	64	14	5	14	1.46
80130--80187	24	2.5	24	83	8	66	36	0	43	20	1.52
80183--80249	24	2.8	25	72	6	75	38	0	35	25	1.56
81469--81601	41	3.3	39	78	7	140	31	18	15	34	1.92
81448--81600	81	1.9	82	86	4	220	32	18	15	33	1.92
82263--82301	5	7.6	5	88	5	60	20	2	2	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82263--82301	16	2.5	15	91	4	60	20	2	2	74	1.06
83844--83907	31	2.1	31	93	0	110	37	18	6	37	1.76
84477--84588	35	3.2	35	88	2	145	42	17	5	33	1.72
95356--95398	3	14.3	3	90	0	59	32	0	34	32	1.58
101010--101057	19	2.5	19	79	3	51	47	8	12	31	1.71
103302--103626	160	2.0	163	98	1	629	42	10	12	34	1.78
105524--105568	18	2.5	18	81	0	54	68	4	4	22	1.25
111500--111569	19	3.5	19	70	11	68	20	20	21	38	1.94
111480--111568	41	2.2	41	93	2	153	21	20	22	35	1.96
111650--111715	6	11.5	6	93	4	102	28	54	16	0	1.42
111654--111715	23	2.7	24	92	7	103	27	54	17	0	1.43
111650--111715	29	2.3	29	94	2	116	28	54	16	0	1.42
112211--112282	6	12.5	6	91	8	123	0	15	51	33	1.44
112221--112276	27	2.1	27	100	0	112	0	14	51	33	1.42
112375--112454	20	3.9	20	82	9	99	40	23	23	12	1.89
112447--112496	21	2.4	21	93	0	82	32	28	14	26	1.94

Tables:   1

The End!