genome.fa.s3605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003605.1 Hibiscus syriacus cultivar Beakdansim tig00007624_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122085

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9054--9561	252	2.0	256	94	2	900	43	16	16	23	1.87
13968--14019	13	3.7	13	78	16	59	53	1	0	44	1.11
14188--14219	14	2.3	14	94	0	55	28	0	3	68	1.04
16726--16773	21	2.3	20	79	10	53	41	2	4	52	1.32
18906--18986	31	2.6	31	84	3	101	45	6	4	43	1.50
22834--22860	3	9.0	3	100	0	54	66	0	0	33	0.92
23612--23689	33	2.3	34	88	4	122	29	8	11	50	1.69
24528--24655	60	2.1	60	87	5	179	31	26	6	35	1.81
24703--24842	59	2.4	59	80	6	158	45	2	19	32	1.65
29160--29184	13	1.9	13	100	0	50	84	8	0	8	0.79
40588--40689	50	2.0	50	98	0	195	50	19	8	21	1.75
46400--46496	48	2.0	48	97	0	185	36	8	7	48	1.61
46409--46483	23	3.2	23	62	20	55	37	8	5	49	1.55
49206--50547	272	4.9	270	84	4	1522	33	20	15	30	1.94
50532--50843	96	3.2	96	84	2	387	23	21	17	38	1.93
51065--51336	66	4.1	66	92	0	445	23	22	12	40	1.89
57134--57166	15	2.2	15	94	0	57	9	24	12	54	1.66
60488--60594	6	17.8	6	95	0	187	15	14	33	36	1.88
65728--65793	34	1.9	34	81	6	80	42	4	6	46	1.48
67302--67339	14	2.7	15	84	8	53	28	7	26	36	1.84
70201--70280	39	2.1	39	83	9	101	20	18	23	37	1.94
70212--70300	39	2.3	41	80	9	105	23	17	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72373--72415	7	5.7	7	83	10	50	37	0	0	62	0.95
72373--72425	15	3.4	16	76	23	51	37	0	0	62	0.96
73240--73315	36	2.1	36	85	7	100	47	1	3	47	1.29
76008--76061	17	3.4	17	72	15	60	37	12	3	46	1.60
80298--80347	23	2.2	23	82	7	57	22	12	12	54	1.69
82385--82421	14	2.6	14	82	0	56	45	21	0	32	1.52
83770--83836	21	3.2	21	68	4	55	19	20	35	23	1.95
83770--83891	42	2.9	41	79	8	104	22	18	36	22	1.95
85910--86008	33	3.0	33	89	1	144	39	26	23	11	1.88
85885--86107	19	12.1	19	81	11	250	44	21	21	11	1.84
86103--86183	19	4.5	19	74	16	73	11	17	24	46	1.80
86756--86848	20	4.5	21	78	4	100	17	24	18	39	1.91
86695--86829	41	3.3	41	84	4	148	19	21	21	37	1.94
86756--86848	41	2.3	41	100	0	186	17	24	18	39	1.91
88883--89028	71	2.0	73	97	2	278	24	15	16	43	1.87
94630--94684	29	1.9	28	88	3	83	29	23	12	34	1.92
94886--94926	10	4.1	10	84	12	57	31	26	0	41	1.56
94950--94978	14	2.1	14	93	6	51	27	6	0	65	1.18
95052--95274	112	2.0	112	95	0	403	35	8	11	45	1.69
96781--96838	18	3.2	18	92	0	98	31	31	15	22	1.95
97182--97229	9	5.3	9	82	9	53	33	25	33	8	1.86
98514--98648	50	2.7	50	95	0	234	40	14	7	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102227--102265	21	1.9	20	84	5	51	25	12	5	56	1.57
103755--103792	17	2.4	16	86	8	51	34	0	7	57	1.28
118649--118697	24	1.9	25	88	12	73	61	0	0	38	0.96

Tables:   1

The End!