genome.fa.s3607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003607.1 Hibiscus syriacus cultivar Beakdansim tig00007626_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61419

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70--128	30	2.0	30	83	3	75	13	22	15	49	1.79
5812--5881	29	2.4	29	81	11	90	52	5	4	37	1.45
8098--8180	32	2.7	30	74	9	85	39	7	24	28	1.82
8423--8457	18	1.9	18	94	0	61	20	22	34	22	1.97
9207--9329	32	3.8	32	70	6	88	34	13	12	39	1.81
10000--10030	2	15.5	2	100	0	62	48	0	0	51	1.00
10752--10788	19	1.9	19	88	0	56	35	29	13	21	1.92
10821--10886	21	3.2	21	79	10	73	24	18	22	34	1.96
10916--10988	20	3.7	20	94	0	119	30	28	17	23	1.97
14083--14117	18	1.9	18	94	0	61	54	22	2	20	1.58
14295--14549	20	13.7	20	74	14	197	35	21	20	21	1.96
14300--14456	54	2.9	54	92	0	242	37	22	20	19	1.94
14374--14583	34	5.9	34	72	15	163	36	21	20	21	1.96
14295--14561	74	3.6	73	85	5	315	36	21	20	21	1.95
14683--14758	30	2.3	34	76	21	97	53	13	2	30	1.53
14698--14763	30	2.2	30	97	0	123	54	13	1	30	1.48
16036--16077	21	2.0	21	100	0	84	42	19	19	19	1.89
16169--16271	21	4.9	21	75	4	91	24	20	34	20	1.96
16162--16271	42	2.6	42	76	2	123	25	19	36	19	1.95
16749--16789	20	2.0	20	100	0	82	48	24	12	14	1.78
16759--16885	20	6.4	20	85	0	85	38	23	17	20	1.93
16779--16893	40	2.9	39	79	3	131	38	21	19	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16934--17109	20	9.4	20	71	16	126	19	21	23	35	1.96
16988--17090	54	1.9	53	84	7	136	18	21	25	34	1.96
16927--17101	74	2.4	74	88	3	280	21	21	21	35	1.96
19118--19173	20	2.8	20	91	0	85	50	21	16	12	1.78
19121--19189	20	3.5	20	87	0	75	42	23	17	17	1.89
19550--19629	22	3.6	22	84	0	97	23	18	37	20	1.94
19782--19866	20	4.2	20	93	0	143	23	20	29	27	1.99
19982--20047	19	3.5	19	95	0	123	24	13	25	36	1.92
19973--20047	38	2.0	38	91	0	123	24	13	28	34	1.93
27344--27401	3	20.0	3	76	13	59	27	3	1	67	1.17
27481--27605	25	5.0	25	96	2	225	36	20	15	27	1.93
29959--30001	16	2.6	16	85	7	52	32	4	4	58	1.39
42058--42269	89	2.4	90	87	3	295	27	29	18	24	1.98
42468--42525	3	20.0	3	76	13	59	27	3	1	67	1.17
42605--42729	25	5.0	25	94	2	216	36	20	15	28	1.92
45083--45125	16	2.6	16	85	7	52	32	4	4	58	1.39
47401--47501	51	2.0	51	92	0	166	32	14	8	43	1.77
50382--50437	3	19.0	3	96	3	105	67	0	0	32	0.91
50384--50435	26	2.0	26	100	0	104	69	0	0	30	0.89

Tables:   1

The End!