genome.fa.s3608.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003608.1 Hibiscus syriacus cultivar Beakdansim tig00007635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83467

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5158--5455	141	2.1	142	95	1	544	36	15	9	38	1.80
6010--6064	28	2.0	28	92	3	94	36	9	3	50	1.51
12549--12624	31	2.5	31	95	0	134	43	11	22	22	1.85
13879--13923	21	2.1	21	87	0	63	31	28	24	15	1.96
14716--14840	31	4.0	31	91	2	189	20	20	22	36	1.95
17994--18038	21	2.1	21	87	0	63	31	28	24	15	1.96
18835--18959	31	4.0	31	92	2	198	20	20	23	36	1.95
20088--20139	23	2.3	23	86	0	68	30	15	15	38	1.88
21207--21268	28	2.2	28	91	0	97	54	9	8	27	1.61
26009--26075	33	2.1	33	88	2	100	14	22	20	41	1.89
31794--31912	36	3.3	34	80	11	132	43	3	8	44	1.51
31813--31912	37	2.8	35	83	10	130	43	3	10	44	1.53
31822--32116	113	2.6	111	80	9	298	45	2	7	44	1.46
31830--32127	38	7.9	37	79	10	275	44	3	7	44	1.48
32108--32147	20	2.0	20	85	0	53	35	2	17	45	1.62
32183--32228	8	5.5	8	90	10	74	10	0	0	89	0.50
32178--32222	8	4.9	10	76	20	53	11	2	0	86	0.65
32178--32228	18	2.9	17	88	11	77	11	1	0	86	0.66
34285--34510	103	2.2	103	93	1	382	26	13	23	36	1.92
34509--34586	23	3.3	23	81	1	93	24	20	23	32	1.98
36208--36265	30	1.9	31	82	6	75	20	6	1	70	1.19
41165--41382	123	1.8	122	84	9	306	41	4	5	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41437--41467	15	2.1	15	93	0	53	45	0	0	54	0.99
41617--41653	20	1.9	19	89	10	58	18	18	10	51	1.75
42499--42554	20	2.8	20	86	10	78	35	12	23	28	1.91
42617--42665	19	2.6	19	100	0	98	24	14	26	34	1.94
43340--43389	21	2.4	21	93	0	82	32	32	20	16	1.94
43421--43534	21	5.4	21	67	15	74	24	20	18	36	1.94
43385--43545	42	3.9	42	88	2	238	24	20	18	36	1.95
43486--43564	19	3.9	19	69	9	59	25	20	20	34	1.96
43385--43602	61	3.6	61	79	10	232	24	20	18	35	1.95
44447--44581	21	6.4	21	75	13	134	34	22	22	20	1.97
44447--44597	42	3.7	43	82	11	183	35	21	21	21	1.96
44419--44539	63	1.9	63	94	0	215	34	23	20	21	1.97
44593--44643	21	2.4	21	93	0	84	15	21	31	31	1.95
45282--46130	303	2.8	303	93	0	1470	26	26	22	24	2.00
53795--53852	24	2.4	24	79	0	71	55	18	15	10	1.68
54035--54073	14	2.8	14	88	0	60	61	17	10	10	1.55
60414--60456	21	2.0	21	86	0	59	18	30	25	25	1.98
62364--62708	175	2.0	168	88	3	510	17	21	17	43	1.88
64036--64060	2	12.5	2	100	0	50	52	0	0	48	1.00
66684--66762	29	2.7	29	86	0	113	31	18	8	40	1.82
67122--67173	9	6.1	9	76	13	56	32	1	1	63	1.16
67121--67170	17	3.0	17	91	2	75	34	2	4	60	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67130--67175	16	2.9	16	87	6	58	30	2	2	65	1.16
69039--69095	9	6.7	9	74	11	57	33	0	1	64	1.04
69038--69087	17	3.0	17	91	2	75	36	0	4	60	1.16
72334--72409	29	2.6	29	81	10	75	31	9	28	30	1.88
74926--75034	36	3.0	36	90	0	173	31	30	9	29	1.88
79768--79815	22	2.1	23	88	3	71	41	12	27	18	1.86
81631--81675	22	2.0	22	86	4	63	28	31	26	13	1.94
82958--83171	102	2.1	104	92	4	362	28	11	22	36	1.90
83175--83226	21	2.5	22	84	9	72	23	30	19	26	1.98
83188--83242	24	2.5	21	80	11	58	16	27	27	29	1.97

Tables:   1

The End!